PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024676
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 271aa    MW: 29869.4 Da    PI: 4.775
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024676genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30134192259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D+++WrKYGqK++kgs+fprsYYrC+s  gCp +k+vers++d+++++itY+ +H+h+
  Lus10024676 134 SDKWAWRKYGQKPIKGSPFPRSYYRCSSLkGCPDRKQVERSTSDNSIFIITYTADHTHP 192
                  7**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31119194IPR003657WRKY domain
SuperFamilySSF1182906.8E-26127194IPR003657WRKY domain
PROSITE profilePS5081131.387128194IPR003657WRKY domain
SMARTSM007742.2E-33133193IPR003657WRKY domain
PfamPF031066.6E-25135192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADWDLDAVV RGCNSNPLIP NPSFSPMELE FPVTSTGFCF EEYDDQFFDA DLDGLLEGLY  60
KPFCNYQQPS STLLTADPPP PPDQLPAGVV GPDLSSASSS ASCVEQSNPV VKLRKRKSQQ  120
KRVVEHVTEE AICSDKWAWR KYGQKPIKGS PFPRSYYRCS SLKGCPDRKQ VERSTSDNSI  180
FIITYTADHT HPLPTRRNSL AGTTRTKAPP AAVAPPATSD EQLHEVLVKV EELQSSNVDD  240
DFFSTSGVVF SDDLFPGGMG HLDGMFLNRW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20122194274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024676
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658402.13e-57PREDICTED: WRKY transcription factor 22 isoform X2
TrEMBLF6HUN41e-55F6HUN4_VITVI; Uncharacterized protein
STRINGLus100246760.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-44WRKY DNA-binding protein 27