PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024143
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 413aa    MW: 45214.9 Da    PI: 10.3953
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024143genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.33e-1631115186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  v  L+ea++ ++   +r+klk+++We+v++++     ++   ++++qCk+k+e+++kry+ + +         ss++p++++l+
  Lus10024143  31 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVARFVssraNSTRAPKTQTQCKNKIESMKKRYRSESAAGDA-----SSSWPLYHRLH 115
                  5*************************************87666667788999**************99988776.....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.8E-1929117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDKETTHHHD DDSPRKLQSI AGGGDRLKRD EWSEGAVSSL LEAYETKWVL RNRAKLKGQD  60
WEDVARFVSS RANSTRAPKT QTQCKNKIES MKKRYRSESA AGDASSSWPL YHRLHHLLRG  120
SATTTPASVP LSHPLPPAEP LLSPTAVFSS SSSSRQVQNQ HLHHQRHLPP PPLLLLEPSP  180
GNSTLLSPPA HSTLLQQTPG QLQQKLPPPM PPQPTPVTMI VSPLPTPSPA AITGTAAQNS  240
HGSDGVDRVG GKEEVKRIPG GGGKLSPEHV PDKNTNAAAM DDTDSSTPAQ VYSETKETNK  300
KFGTTKSNRA KKMKRKGGSG SERRRSSSEY WEIAESIRWM AEVVVRSEQA RMETMKEVEK  360
MRIEADAKRG EIELKRTEIL ANTQLEIAKL FAAGLTKSGR STVDSSLRIG RN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028770035.11e-106trihelix transcription factor ASIL1-like
RefseqXP_028796994.11e-106trihelix transcription factor ASIL1-like
TrEMBLA0A2Z6ME361e-107A0A2Z6ME36_TRISU; Uncharacterized protein
STRINGLus100241430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-51sequence-specific DNA binding transcription factors