PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024101
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 378aa    MW: 41662.9 Da    PI: 8.9066
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024101genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.2e-1642101155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  s+n    k+ ++++lg ++ +e Aa a++ a++k++g
  Lus10024101  42 SVYRGVTRHRWTGRYEAHLWDkNSWNDsqnKKgRQVYLGAYDEEEAAAHAYDLAALKYWG 101
                  78*******************888855566446*************************98 PP
2AP249.31.2e-15144195155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Lus10024101 144 SKFRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195
                  79****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1742111IPR016177DNA-binding domain
PfamPF008479.4E-1342101IPR001471AP2/ERF domain
PROSITE profilePS5103219.92843109IPR001471AP2/ERF domain
SMARTSM003802.4E-2543115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1643110IPR001471AP2/ERF domain
PRINTSPR003674.4E-64455IPR001471AP2/ERF domain
CDDcd000187.41E-23144205No hitNo description
PfamPF008473.5E-11144195IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-17144205IPR016177DNA-binding domain
SMARTSM003802.3E-24145209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-17145204IPR001471AP2/ERF domain
PROSITE profilePS5103217.886145203IPR001471AP2/ERF domain
PRINTSPR003674.4E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAKMSKKTTA TAARAKDKSS NELSGKRTRK SVPRDSPPKR SSVYRGVTRH RWTGRYEAHL  60
WDKNSWNDSQ NKKGRQVYLG AYDEEEAAAH AYDLAALKYW GSHTILNFPL ETYDKETKEM  120
EGQSKEEYIG SLRRKSSGFS RGVSKFRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDMAA IEYRGVNAVT NFDLSRYIHC LRPNGTQTPT TSNGDTTTPP VDEDIHSPSL  240
DDVVLNQLAA ASPSPTHFFN QTASPTGSTT PSGIISGSSG GSPSSSSTTS ALGLLLQSSK  300
FKEMLERTSR STATTTGSRP SRPAPEVSDH QLPRRSFPED IQTYFDCQDS GSYAGEEILF  360
GNLNDFVSPI FHCDLDG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448435.11e-163AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_024452992.11e-163AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-101AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2B9731e-162A0A2K2B973_POPTR; Uncharacterized protein
STRINGLus100241010.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-88AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]