PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023691
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 462aa    MW: 51333.3 Da    PI: 9.6833
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023691genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.6e-18451191696
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  l +pkkf ++ +  ++ +ktltl+ +sg  W+v l  +++ +++++++GWkeF+ +n L++ D +vFk++g+s f   v +
  Lus10023691  45 LEMPKKFSNSLK--SKLPKTLTLTGPSGANWSVGL--TNTAETTFFSSGWKEFATDNCLQVDDLLVFKYNGDSHF--DVLI 119
                  678****75555..55999****************..**********************************9999..5555 PP
2B338.42.2e-12244328184
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                  f++v+++s+v++   l++p   +++h +k  e+++++l+  + ++W vk++ r+k++r    +++GW+ F+++n+L+  D+++F+ 
  Lus10023691 244 FISVMKTSSVSTAYYLSVPSWWMKKHVNKYWETQEVILKV-EENEWPVKFRPRRKKNRnwGGFGGGWRIFAQDNHLQLFDVCLFQP 328
                  8899**********************77777777888776.7799*****77555555338899********************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-2028121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.42530123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-2031121IPR015300DNA-binding pseudobarrel domain
CDDcd100175.68E-1732120No hitNo description
SMARTSM010194.9E-1333123IPR003340B3 DNA binding domain
PfamPF023627.4E-1545117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-14239328IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-15243326No hitNo description
SuperFamilySSF1019365.3E-13243332IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-11244329IPR003340B3 DNA binding domain
PROSITE profilePS5086310.461244347IPR003340B3 DNA binding domain
SMARTSM010197.9E-8244347IPR003340B3 DNA binding domain
PRINTSPR002982.1E-18344369IPR001844Chaperonin Cpn60
SuperFamilySSF548492.93E-12349403No hitNo description
Gene3DG3DSA:3.30.260.104.9E-13354404IPR027410TCP-1-like chaperonin intermediate domain
PfamPF001189.7E-11365440IPR002423Chaperonin Cpn60/TCP-1 family
SuperFamilySSF485927.02E-8387440No hitNo description
PRINTSPR002982.1E-18392413IPR001844Chaperonin Cpn60
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042026Biological Processprotein refolding
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MTMKEKEEEE GESKACSSWE EEIYWTHFQF THFFRLLHPG FHLTLEMPKK FSNSLKSKLP  60
KTLTLTGPSG ANWSVGLTNT AETTFFSSGW KEFATDNCLQ VDDLLVFKYN GDSHFDVLIL  120
ESPTSCEKAT AYFVKKNNKK KKSVGGKQPS VITGEREIIN ENSGGGVSPA STGIRPDVDS  180
PGSSSTDWQH VSSGECNKRD KVKLDKVGKS RRRRVSELNR TPVTEESKRK ALRLASYAGN  240
QDSFISVMKT SSVSTAYYLS VPSWWMKKHV NKYWETQEVI LKVEENEWPV KFRPRRKKNR  300
NWGGFGGGWR IFAQDNHLQL FDVCLFQPCS CTPTSNTSLV LNIRSVVKLS TSGSEKEKLK  360
ERLANLSGGV AVLKIGGASE ADVGEKKHRV TDAPNATKAA LEEGIVPGGG VALLYDAKEL  420
DKLQTANFDQ KIGVQIIQNA KGQLLPDIRV IPFSSSLLLP K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4pj1_A2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_B2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_C2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_D2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_E2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_F2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_G2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_H2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_I2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_J2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_K2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_L2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_M2e-2434943838247160 kDa heat shock protein, mitochondrial
4pj1_N2e-2434943838247160 kDa heat shock protein, mitochondrial
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292296RPRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023691
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100236910.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-40B3 family protein