PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37584.5 Da PI: 8.1234 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.7 | 1.5e-55 | 22 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ Lus10021659 22 LPPGFRFHPTDEELISHYLYNKVIDVRFSC-RAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKS 117 79****************************.89***************888999****************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykgrapkgek++Wvmheyrl Lus10021659 118 LVGMKKTLVFYKGRAPKGEKSNWVMHEYRL 147 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-64 | 17 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.045 | 22 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-29 | 23 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MENNVACGVG MVMEEEDDQM DLPPGFRFHP TDEELISHYL YNKVIDVRFS CRAIGDVDLN 60 KSEPWELPWK AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYRGKSLVG 120 MKKTLVFYKG RAPKGEKSNW VMHEYRLDGK FSIHNLPKTA KNEWVICRVF QKTCGGKKIH 180 ISGITRFGEL QGHHHNSSSM LPPLMESPSA NYDQKFTIKP AVAAESSSAY VPCFSNLITN 240 MNTTNNSSTS SSQFLSNPII PSSSSSSIPL FPSSHYNSQL IPSANFGQYN DNSILLRALM 300 ADKQGGGGGS SLNLMNSTEI SPSATGPVDL DSIWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 8 | 178 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 8 | 178 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 8 | 178 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 8 | 178 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-54 | 8 | 178 | 1 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 8 | 178 | 1 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021659 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080293.1 | 1e-134 | NAC domain-containing protein 100 | ||||
Refseq | XP_017972125.1 | 1e-134 | PREDICTED: NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-123 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A061FWI7 | 1e-133 | A0A061FWI7_THECC; NAC domain protein, IPR003441 | ||||
TrEMBL | R4N7I9 | 1e-133 | R4N7I9_JATCU; NAC transcription factor 002 | ||||
STRING | Lus10021659 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-116 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Lus10021659 |
Publications ? help Back to Top | |||
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