PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10020226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | FAR1 | ||||||||
Protein Properties | Length: 250aa MW: 27870.4 Da PI: 7.9906 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.8 | 1.1e-20 | 64 | 167 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerr.........traetrtgCkaklkvkkekdgkwev 78 fY +YA++ GF vr++ +++ r+g ++ rt vC+keg+++ ++k+ + + a r+gC+ak+ k+ ++gkw v Lus10020226 64 FYTAYAQRNGFGVRVRDHSRG-REGFVVARTIVCNKEGFKKGKEKAkvnnitylkkknN----KlktaalplpAAAPFRMGCNAKVAFKRLETGKWTV 156 9****************9998.8888***************99999999**99865431....244566777678889******************** PP FAR1 79 tkleleHnHel 89 +++ +eHnH+l Lus10020226 157 KRFIKEHNHPL 167 *********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-18 | 64 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDSDGGGGSD GNPDPISGDD GAASAPDLNR NESSSNREKE IAVVDPDEPY VGREFDSEAE 60 SVAFYTAYAQ RNGFGVRVRD HSRGREGFVV ARTIVCNKEG FKKGKEKAKV NNITYLKKKN 120 NKLKTAALPL PAAAPFRMGC NAKVAFKRLE TGKWTVKRFI KEHNHPLYVQ ELFSCPRVLQ 180 IPADDRIVHQ LNEELAKERV RSASLREMVQ ALLSHIEEHT QGLSQKVECM VEKVNKIDDS 240 REKEHIAEY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10020226 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10020226 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-28 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10020226 |