PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020226
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family FAR1
Protein Properties Length: 250aa    MW: 27870.4 Da    PI: 7.9906
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020226genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.81.1e-2064167289
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerr.........traetrtgCkaklkvkkekdgkwev 78 
                  fY +YA++ GF vr++ +++  r+g ++ rt vC+keg+++ ++k+            +    +           a  r+gC+ak+  k+ ++gkw v
  Lus10020226  64 FYTAYAQRNGFGVRVRDHSRG-REGFVVARTIVCNKEGFKKGKEKAkvnnitylkkknN----KlktaalplpAAAPFRMGCNAKVAFKRLETGKWTV 156
                  9****************9998.8888***************99999999**99865431....244566777678889******************** PP

         FAR1  79 tkleleHnHel 89 
                  +++ +eHnH+l
  Lus10020226 157 KRFIKEHNHPL 167
                  *********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1864167IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDSDGGGGSD GNPDPISGDD GAASAPDLNR NESSSNREKE IAVVDPDEPY VGREFDSEAE  60
SVAFYTAYAQ RNGFGVRVRD HSRGREGFVV ARTIVCNKEG FKKGKEKAKV NNITYLKKKN  120
NKLKTAALPL PAAAPFRMGC NAKVAFKRLE TGKWTVKRFI KEHNHPLYVQ ELFSCPRVLQ  180
IPADDRIVHQ LNEELAKERV RSASLREMVQ ALLSHIEEHT QGLSQKVECM VEKVNKIDDS  240
REKEHIAEY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100202260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-28FAR1 family protein