PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018219
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 417aa    MW: 45460.8 Da    PI: 8.0643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018219genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064157180123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ Cg++   +++L++H+ + H
  Lus10018219 157 FPCTVCGEVLQKPHLLEQHLAVkH 180
                  89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280159180IPR007087Zinc finger, C2H2
SuperFamilySSF563993.17E-12182228No hitNo description
Gene3DG3DSA:3.90.228.101.6E-4185313IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563993.17E-12255274No hitNo description
SuperFamilySSF563993.17E-12302413No hitNo description
Gene3DG3DSA:3.90.228.107.0E-6344413IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MANISSSVLN RFFSLFLILL HLGCFVFLSR DQSPSHPTRK RKSSSDDDDK DKDDHSPPAA  60
SRRRRSSPLL SSSWSYIKRV FTCKSMYNSP PPPLPLPISP AQTSSARSSQ KSSLLIATDD  120
DADFPSKISH HPPLPISASP ESDISSTDRL PLRNDIFPCT VCGEVLQKPH LLEQHLAVKH  180
AVSELRDGDS GNNIVRIIFK AGWNSAPKSP EIHRILKIHN SPKILTRFEE YREFVKSKAS  240
KISHVASGGG RVRDERCIAD GNELLRFHCA TFVCDLGLNM GGGCGGAGWP TSSLCNQQYC  300
SVCGIIKSGF SPKMDGISTL STSWRAHAAI PAEIEEEFKF MNIKRAMLVC RVIAGRVGCE  360
MEEADKEGVG YDSLVGRGRG GGGGGVQQGN LDDEELLVFN PKAVLPCFVI VYTCEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742TRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018219
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744460.0JX174446.1 Linum usitatissimum clone LuBAC375M9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021659100.11e-158uncharacterized protein LOC110649011
TrEMBLI6YM710.0I6YM71_LINUS; Uncharacterized protein
STRINGLus100182190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.14e-96C2H2 family protein