PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018124
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 477aa    MW: 53113.3 Da    PI: 9.6893
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018124genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17154203155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d+     rk+++lg f+ta  Aa+a+++a+ k++g
  Lus10018124 154 SQYRGVTFYRRTGRWESHIWDC-----RKQVYLGGFDTAHAAARAYDRAAIKFRG 203
                  78*******************5.....5************************997 PP
2AP232.32.4e-10246294153
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                  s+y+GV+ +k  g W+A+   +     +k+++lg f+++ eAa+a+++a  + 
  Lus10018124 246 SKYRGVTLHK-CGWWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAVINC 294
                  89********.7******5553..2.26**********99********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-9154203IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-15154211IPR016177DNA-binding domain
PROSITE profilePS5103217.938155211IPR001471AP2/ERF domain
SMARTSM003807.2E-32155217IPR001471AP2/ERF domain
CDDcd000181.73E-10155210No hitNo description
Gene3DG3DSA:3.30.730.108.3E-17155211IPR001471AP2/ERF domain
PfamPF008476.9E-6246294IPR001471AP2/ERF domain
CDDcd000181.25E-21246306No hitNo description
SuperFamilySSF541718.5E-15246305IPR016177DNA-binding domain
PROSITE profilePS5103214.262247304IPR001471AP2/ERF domain
SMARTSM003802.6E-27247310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-14247304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLDLNLSVES AESTHDCYSI SFVENNYESH LLQPEASGTS NSSVVNAEVS SNEESCSTRA  60
QAANNDRSYR SGGNPIRADE ADVVVTKDFF PVSHGKLESG GGFVCPPGNW INLTFDRQDE  120
ISSGGGGNGG AVRVIHQASQ HVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCRKQVY  180
LGGFDTAHAA ARAYDRAAIK FRGVDADINF SIGDYEEDME QMKNLEKEEF VHILRRQSTG  240
FSRGSSKYRG VTLHKCGWWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA VINCNGREAV  300
TNFEPSTYVG EMPSDSRIEG TGQNLNLNFA ISPSLAGCSM ETGGQLPFHP GPTGLRSRNS  360
KMENPMGKMV GDPHLNGLVR MTDHAMPLNG AYATFFKSER SLSTRRVGEA RRRGAAENAT  420
EAHLRSGRWI KDDSFITGRR RLTRRRRRAR RFRSCMVKSV RVGQIGESRF SGLIYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1439446RRLTRRRR
2443450RRRRRARR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018124
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012064916.11e-148ethylene-responsive transcription factor RAP2-7 isoform X1
RefseqXP_012064917.11e-148ethylene-responsive transcription factor RAP2-7 isoform X1
RefseqXP_020532581.11e-148ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-96RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A067L6P31e-146A0A067L6P3_JATCU; Uncharacterized protein
STRINGLus100181240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-103related to AP2.7