PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016948
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 280aa    MW: 30895.9 Da    PI: 8.841
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016948genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
      Lus10016948 14 KGAWTKEEDQRLIDYIRGHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding57.92.4e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++
      Lus10016948  67 RGNFTDEEDQLIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.856961IPR017930Myb domain
SMARTSM007177.6E-131363IPR001005SANT/Myb domain
SuperFamilySSF466893.95E-2913108IPR009057Homeodomain-like
PfamPF002492.2E-151461IPR001005SANT/Myb domain
CDDcd001677.64E-111661No hitNo description
PROSITE profilePS5129428.90462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2865116IPR009057Homeodomain-like
SMARTSM007171.8E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1667111IPR001005SANT/Myb domain
CDDcd001675.31E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR GHGEGCWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDEEDQLIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSHG  120
IDPQTHRPLN EKPTGAVTAT TVAPPAKPIQ LDFKTNNGIL NFKLQTVKAE SVEENNCSSS  180
GMTTDEELPQ RPTATAAAAG TRSQRDELNL DLTIGLSPYS QPSSASSGNS AESKLDQFGP  240
IIQFSGAAKD VCVCWQLGFS GKCRCQYSGA GELQSRFQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016948
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534486.11e-115transcription repressor MYB6
SwissprotQ388511e-102MYB6_ARATH; Transcription repressor MYB6
TrEMBLB9T8B71e-114B9T8B7_RICCO; R2r3-myb transcription factor, putative
STRINGLus100169480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-99myb domain protein 6