PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016769
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 283aa    MW: 31119.2 Da    PI: 6.504
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016769genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.13.1e-4371071101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC+++Cv+apyfp eqp+kfa vh++FGasnv kll+++p  +reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+ql+ +l+++k
  Lus10016769   7 PCAACKFLRRKCTQECVFAPYFPPEQPAKFASVHRVFGASNVAKLLNEIPAGQREDAVNSLAYEADARLRDPVYGCVGLISILQHKLKQLHIDLDTAK 104
                  7**********************************************************************************************999 PP

       DUF260  99 eel 101
                  +el
  Lus10016769 105 QEL 107
                  975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7766107IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-437104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSSQNSPCAA CKFLRRKCTQ ECVFAPYFPP EQPAKFASVH RVFGASNVAK LLNEIPAGQR  60
EDAVNSLAYE ADARLRDPVY GCVGLISILQ HKLKQLHIDL DTAKQELSKY IDPQAMLPNL  120
GSVVSPSYIA AGMNMMMMMP PNHHHQNMMP MMPIPTDDIN TNEQQLHHQQ IYAAQQLTAT  180
AEIVPQQQQQ QQQQQRFEQE GIRIIDGGGG GEAVSGTAGL NLNQIRSPIS TTASLALGTS  240
RDNRAYQVEL KPVVYHVQPH NLEGRSSECS TAGDDEGRSI ER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-5051109114LOB family transfactor Ramosa2.1
5ly0_B6e-5051109114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016769
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614453.11e-77PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ33e-70LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A0B0PS922e-76A0A0B0PS92_GOSAR; LOB domain-containing 36-like protein
STRINGLus100167690.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.15e-67ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]