PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 467aa MW: 52686.7 Da PI: 10.026 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59 | 8.2e-19 | 47 | 130 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ ++rlv+p +fa+++ k + t+ l+ +sg+sW+v + + ++++ ++++GWkeF++++ L D ++F+++g+ f v vf Lus10016285 47 HSDFNSRLVIPARFAKKMRTK--LPATVNLKGPSGNSWSVGVE-SSNDETLFFSSGWKEFAQDHCLHPTDLLIFRYNGDALF--DVLVF 130 5556678********999755..889****************3.5555669*************************997666..66665 PP | |||||||
2 | B3 | 53.5 | 4.3e-17 | 360 | 442 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f++v+++ +v + +++p +++h +g e+++++l+ gr+W+v+++ r k+++ lt GW+ F+++n+Lk+ D+++F+ + Lus10016285 360 FITVMKTTHVKTCFYMTIPMAWLKKHmDGR--EKQEVILRV-GGREWRVRYKLREKRDSGGLTHGWRTFAEDNNLKQFDVCLFQPS 442 8999**********************6444..334677665.9**********99999999**********************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.875 | 39 | 133 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.32E-22 | 39 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.21E-19 | 42 | 131 | No hit | No description |
SMART | SM01019 | 3.4E-14 | 42 | 133 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-22 | 42 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.9E-16 | 47 | 124 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-20 | 356 | 464 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-15 | 360 | 442 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.2E-9 | 360 | 451 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.182 | 360 | 454 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.31E-17 | 360 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.75E-22 | 360 | 465 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MQLPNFIPGR KLISKKPAME SGSRPSSWEE EIYWNNFQYT HFSTFLHSDF NSRLVIPARF 60 AKKMRTKLPA TVNLKGPSGN SWSVGVESSN DETLFFSSGW KEFAQDHCLH PTDLLIFRYN 120 GDALFDVLVF DLESSCEKAS SYFARKQETR KKMRGYTPAA TTSSAGFISP SPEQQHQTGD 180 TTKQSTCQPV ISELPNKRAR TGWTKATASR DWKSAAEKSR RRALKLASYF TARKQGTGNK 240 IKRVRSEMED PVNHSGWKPA AEESNQKVLK SASYFCVQNH QEMGGSSTAT ISGEDGNSIR 300 TKTPPLPTCP PIICELSNKR AREELTKPAG VMNNDWKTVS EESKLKAIRA ARFALKEDGF 360 ITVMKTTHVK TCFYMTIPMA WLKKHMDGRE KQEVILRVGG REWRVRYKLR EKRDSGGLTH 420 GWRTFAEDNN LKQFDVCLFQ PSNSSYNVPG ADAAADIVLD VEIFRC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016285 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10016285 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10016285 |