PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015704
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 387aa    MW: 42194.7 Da    PI: 7.9499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015704genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12320365655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L+el Pk     +k  + +e+L +Av+YIk+Lq
  Lus10015704 320 SIAERVRRTKISERMRKLQELFPKT----DKQTNTSEMLDMAVDYIKDLQ 365
                  689*********************8....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.075314364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-15317379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.16E-11318369No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14319375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-11320370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-9320365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSMIYSPNLK YPDGELGIKN GFQLDHHQFP LDLSPNFSNA NYNQGNNSGL ARLRSAPSSF  60
LADLVNGGCS SDSLGFDDFR FFRPPSPDID AIFGELQGFG EAAVKKEASD SEIGSFQQNN  120
NLGGDRTALS CMDTTTFSSI LGSSSSSSSA FAAGGGNGSN LARHNSSPAG FFSSIVVENG  180
FHGVGEANNP SSRSNSGSKL RRSTQLPKIS EIGEETFLST TNSSSGKRPY SSSVNISWDN  240
ASWSTGHKKL KQDRHDDDDF DLFALDNLQQ QNGGNRLTHH LSLPKTAAEM ESIEKFLQLQ  300
GGAVPCKIRA KRGFATHPRS IAERVRRTKI SERMRKLQEL FPKTDKQTNT SEMLDMAVDY  360
IKDLQKQVQS LRDTKARCTC LREHTA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314023.11e-94transcription factor bHLH130 isoform X2
RefseqXP_011007348.18e-95PREDICTED: transcription factor bHLH130-like
RefseqXP_011007349.18e-95PREDICTED: transcription factor bHLH130-like
RefseqXP_024463709.11e-94transcription factor bHLH130 isoform X2
TrEMBLB9HNL62e-93B9HNL6_POPTR; Uncharacterized protein
STRINGLus100157040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-49bHLH family protein