PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009468
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 130aa    MW: 13986.7 Da    PI: 9.6312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009468genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-161463255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +ykGVr++k +g+Wv+eIr+p   g +  r +lg++ ++e Aa a++ a  +l+g
  Lus10009468 14 KYKGVRRRK-WGKWVSEIRVP---G-TqERLWLGSYSSPEAAAFAHDVASFCLKG 63
                 8*****998.**********8...3.35**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-251373IPR001471AP2/ERF domain
CDDcd000181.05E-231472No hitNo description
PfamPF008471.4E-91463IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-171473IPR016177DNA-binding domain
SMARTSM003809.3E-271478IPR001471AP2/ERF domain
PROSITE profilePS5103221.2981472IPR001471AP2/ERF domain
PRINTSPR003675.8E-81526IPR001471AP2/ERF domain
PRINTSPR003675.8E-83753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MNHPAVADVD SDRKYKGVRR RKWGKWVSEI RVPGTQERLW LGSYSSPEAA AFAHDVASFC  60
LKGNSSSPSN FPMTALPALR QDMSPKSVQR AASEAGVAVD AQMILRNSQN GAGSGSTGRE  120
LNVSVEDYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605766.13e-47ethylene-responsive transcription factor ERF020-like
SwissprotO805422e-39ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA0A2C9WFS48e-46A0A2C9WFS4_MANES; Uncharacterized protein
STRINGLus100094682e-91(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.17e-42ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]