PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB_related | ||||||||
Protein Properties | Length: 290aa MW: 31937.3 Da PI: 5.1873 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 rg WT+eEd +l ++ q+G+++W++I++ gRt++++k++w++ Lus10008353 14 RGQWTPEEDNKLSSYISQHGTRNWRLIPKNAAqlPGRTDNDVKNHWNT 61 89***************************999999***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-23 | 5 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.742 | 9 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.16E-16 | 9 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-14 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.64E-14 | 17 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIS QHGTRNWRLI PKNAAQLPGR TDNDVKNHWN 60 TKLKKKLSGM GIDPVTHKPF SHLMAEIATT LAPPQVAHLA EAALGCFKDE MLHLLTKKRI 120 DFQLQNHSSN SNQGGGGGVN NLLHSSSMPS YIAAAKHEDN DEDTIEKIKL GLSRAMQQEQ 180 QPGMMSPNKN WDSNSQPRAA HFSNMFQCGP SSFGNEGEVS PWSQSMCTES TGGDQQGQLH 240 DKLEEDDDNV EDECEGGKDD ARNNGSSSIF STDCVLWDLP SDDLMNTVV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008353 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021678281.1 | 1e-132 | transcription factor MYB80 | ||||
Swissprot | Q7XQN1 | 1e-74 | MYB80_ORYSJ; Transcription factor MYB80 | ||||
TrEMBL | A0A067KMW7 | 1e-132 | A0A067KMW7_JATCU; Uncharacterized protein | ||||
STRING | Lus10008353 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10878 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 6e-73 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Lus10008353 |