PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007726
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 149aa    MW: 17118.2 Da    PI: 10.1105
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007726genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.5e-1157107555
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                  ++err+ +NRe+ArrsR RKk  +e+L+e +  L  eN++Lk  l +   +
  Lus10007726  57 RKERRMKSNRESARRSRWRKKRHLEKLTEQANRLRMENQELKYMLGSTLSQ 107
                  79***************************************9777665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-953102No hitNo description
SMARTSM003381.2E-953117IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.4845598IPR004827Basic-leucine zipper domain
PfamPF001705.6E-957109IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.38E-1057110No hitNo description
CDDcd147021.60E-1558109No hitNo description
PROSITE patternPS0003606075IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MFATEFDCPV HIEQGFTAHD LENLLSIFDS QTGGSPNSNS GSEGWSNRSV NYDVDERKER  60
RMKSNRESAR RSRWRKKRHL EKLTEQANRL RMENQELKYM LGSTLSQCHV VRRDNQRLRS  120
ESVALRGRLT HLCHALVAMH GHAVNNGL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021285085.12e-44basic leucine zipper 4
SwissprotQ9LQ651e-15BZIP4_ARATH; Basic leucine zipper 4
TrEMBLA0A1R3FYS15e-40A0A1R3FYS1_COCAP; Uncharacterized protein
STRINGLus100077261e-106(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59963052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59530.19e-18basic leucine-zipper 4
Publications ? help Back to Top
  1. Guo YL, et al.
    Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis.
    Plant Physiol., 2011. 157(2): p. 757-69
    [PMID:21810963]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Ma H, et al.
    ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development.
    Plant Physiol., 2018. 178(2): p. 753-770
    [PMID:30126870]