PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007101
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 384aa    MW: 41114.1 Da    PI: 6.7857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007101genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14169210854
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   Er+RR+++N++f+ Lr+l+P++     +K++Ka+++  A+ YIk+L
  Lus10007101 169 TERQRRQQVNDKFSALRSLIPNP-----TKNDKASVVGDAIGYIKEL 210
                  6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-11162210No hitNo description
SuperFamilySSF474597.74E-15167227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11169210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLNDPPPLPP PYPPSTPDLN LFNLPMSSLL PNSSISFANN NNPKPPMGGG GGGGGYGSWD  60
LPISDGAQSP SSVHYDPLSY LNLPPQPPLF RELFQYLPSH GGGNSLLGGG GLVDIHGGEG  120
SSGGGGGIYP DGDGSSSQQL DSSVLEFNWD MACLAKGRAA GRMAKPLTTE RQRRQQVNDK  180
FSALRSLIPN PTKNDKASVV GDAIGYIKEL LGTVEELKLL VEKKRCSRWR SKRNKTDHQQ  240
NGDIDGGAAM NEGSEMKAAN SNGSGGHGTD QLDKSCNGST LRSSWLQRKS KDTEIDVRII  300
EDEVTIKLVQ RKKINCLLFV SKVLDELHLD LHHVAGGHVG DYYSFLFNTK ICEGSSVYAS  360
AIANKLIEVV DKQYASTPSI SCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161173RMAKPLTTERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663258.11e-149transcription factor bHLH91-like
TrEMBLA0A2C9V5X41e-146A0A2C9V5X4_MANES; Uncharacterized protein
STRINGLus100071010.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.13e-71bHLH family protein