PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005999
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 466aa    MW: 50611.9 Da    PI: 5.452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005999genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.3e-13286331454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YIk+L
  Lus10005999 286 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIKEL 331
                  799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-4425185IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.307282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17284344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-14285335No hitNo description
PfamPF000102.2E-10286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-16286341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-16288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDDLIISPSS SSSVLTAPPP PPPTLQQRLQ FLLQTQIPDW WAYAIFWQTS NDAESGRVFL  60
SWADGHFQGS PDSPPKLTSS SPINDVSAAG NDAVSEAEWF YVMSLTRSFS AGDGVPGKAL  120
TTGSLMWLTG LHELQFHNCD RAKESQLHGV RTLVCIPAHG GVVEIASCDL IKENWGLVQQ  180
VKSLFGSDSS TSSIPKSNPL PFNLDMNISF ADIGIIAGIQ EDDYDDDDRN NNNMESNNKS  240
SLLLSVESEH YSDSDSPMNK TTPLLKRVPK KRGRKPGIPG KGAPLNHVEA ERQRREKLNH  300
RFYALRAVVP NVSRMDKASL LSDAVSYIKE LRARIDELES SGRVPNKRVK LEAPDNNSST  360
TTTASAVEDG IGGGGGMAAA GADQVEVKMV GNDAMIRVQS ENVNSHPGAR LMAALRDVDL  420
RVHHASMSCV NDVMHQDAVV RVPEGLRRED LLISAIVARL DLELV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-29181852192Transcription factor MYC3
4rqw_B6e-29181852192Transcription factor MYC3
4rs9_A6e-29181852192Transcription factor MYC3
4yz6_A6e-29181852192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005999
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301432.10.0transcription factor MYC2
TrEMBLB9GR680.0B9GR68_POPTR; Uncharacterized protein
STRINGLus100059990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.13e-56NACL-inducible gene 1