PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10005073

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 333aa MW: 34929.3 Da PI: 7.3961

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10005073	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.4	1.5e-08	95	139	7	51
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r NReA r++R++Kka+ + Le++v +L a N++L +l+ Lus10005073 95 KKRPLGNREAVRKYREKKKARAASLEDEVVKLRAVNQQLMRRLQG 139 678888*********************************999874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-8	89	156	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-13	91	157	No hit	No description
Pfam	PF07716	3.6E-13	92	146	IPR004827	Basic-leucine zipper domain
CDD	cd14686	2.31E-12	95	148	No hit	No description
SuperFamily	SSF57959	1.06E-6	96	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEDGEVEFSN QEVFSAANMA EFPSSGSMDS FFDELLKDTH ACTHTHTCNP PGPDYSHTHT 60 CFHVHTKIVS ASSGGSDGDD DGTSESVGKK LSSSKKRPLG NREAVRKYRE KKKARAASLE 120 DEVVKLRAVN QQLMRRLQGQ AALEAEVARL KCLLVDIRGR IEGEIGSFPY QKPVAAAAAA 180 NLNLSNMNGA YVMNPCDMQC NDQAYCLHPG MDGKSGGSGG GAGLSGNGQA YGGGGGGGGS 240 GGGCDFENLQ CMMNESSGAK DFSVCGVGNG VTNGISPGSS KRKGRMIMSM KLFAIAHLGC 300 SSFRFVVATR LISMSIYCFV ETLPGVMASG CR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10005073

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ887918	2e-69	HQ887918.1 Linum usitatissimum clone GMU2AYZ01ACED6 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025015713.1	1e-136	basic leucine zipper 19 isoform X3
Swissprot	Q8VY76	3e-98	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	B9T7C9	1e-135	B9T7C9_RICCO; DNA binding protein, putative
STRING	Lus10005073	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2567	32	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	4e-78	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10005073

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]