PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2132220.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 444aa    MW: 48283.6 Da    PI: 5.0928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2132220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-053333701254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A++YIk L
  Lj6g3v2132220.1 333 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 370
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.074321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-6331374No hitNo description
SuperFamilySSF474591.06E-11331384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8335378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAEEFQAGIC GETWWNMNPT RSAFPLMSPS STCSVAANDA GNYSTWQTDF LDLRATRPCV  60
AEETNNNNMV SDVSLGFLDA QKPQQSESAN GTSSFLIDST LQIMGFGLSS PTSSNWNNQS  120
LFHCSGRPQS MEETGLDSSG HHNPQVSSVD ANFKAMNQDF GLDQQGLNSV ITSSGNLSGG  180
LIPINGSGSY GYPSNLVQSL YDSQPQPQNS SLFTNPSMSF SSSNELSPTF SSILKPAMPK  240
QQLSGLHFSN STPFWNASAE ALHDIRAGVF ASSQTQYQTP SFEEKKQNPP SALLNKLKRE  300
ESPDAAKKST STEPALKRPR IETPSPLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL  360
HEAIDYIKFL HDQVNVLSTP YMKSGAPIQN QQGTCDNVKE SSEEDLRRRG LCLVPISSTF  420
PVTNETTVDF WTPTFGGPPM GMGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.55540.0floral bud| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2132220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1385630.0BT138563.1 Lotus japonicus clone JCVI-FLLj-22A12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234019.10.0transcription factor bHLH112 isoform X1
TrEMBLI3SDL60.0I3SDL6_LOTJA; Uncharacterized protein
STRINGXP_007148280.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-72bHLH family protein