PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v1694970.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 321aa MW: 35425.7 Da PI: 6.8916

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v1694970.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.9	5.5e-34	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Lj6g3v1694970.1 51 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 105 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.134	48	108	IPR017930	Myb domain
SuperFamily	SSF46689	7.53E-18	49	105	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-32	50	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-25	51	106	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	53	104	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-23	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MYHPKIQNVP SSTLIGSNSL VHGQHIDCGD STMDPGNGGN SLSNNSNLTS KQRLRWTHEL 60 HERFVDAVAQ LGGPDRATPK GVLRVMGVQG LTIYHVKSHL QKYRLAKYLP DSSSDEGKKA 120 DKKETGDMLS NLDGSSGMQI TEALKLQMEV QKRLHEQLEV QRQLQLRIEA QGKYLKKIIE 180 EQQRLSGVFS EAPADVCREP DNKTDPATPD PEKAAKQHAP AKSLSIESFS SHHEPMTPDS 240 ACHVGSPADS PKEERSAKKQ RVSMDGAYSK PDIVLPHQIL ESSMPSYQQP TTVFLTQEHF 300 DSSLGISTRS EELEKIGGSN L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	51	108	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	51	108	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	51	108	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	51	108	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	51	108	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	51	108	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	51	108	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	51	108	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	51	108	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	51	108	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	51	108	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	51	108	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.2202	0.0	floral bud\| pod\| root

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v1694970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT137456	0.0	BT137456.1 Lotus japonicus clone JCVI-FLLj-12O19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027361390.1	0.0	myb family transcription factor PHL7-like isoform X1
Refseq	XP_027361412.1	0.0	myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	1e-123	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	I3SAF9	0.0	I3SAF9_LOTJA; Uncharacterized protein
STRING	GLYMA15G12940.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-108	G2-like family protein