PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1937400.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 439aa    MW: 46287.4 Da    PI: 7.4331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1937400.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-20207256255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Lj5g3v1937400.1 207 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDDAALRFRG 256
                      7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-22207265IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-32207265IPR001471AP2/ERF domain
PROSITE profilePS5103225.699207264IPR001471AP2/ERF domain
SMARTSM003801.8E-38207270IPR001471AP2/ERF domain
PfamPF008471.5E-13207256IPR001471AP2/ERF domain
PRINTSPR003671.2E-11208219IPR001471AP2/ERF domain
CDDcd000184.57E-14215266No hitNo description
PRINTSPR003671.2E-11230246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MCFPTVAHQR GSSEFVRFTA EQHGGDEETE GSSRQGDGDG SGGSGSSGPS SSQFQLVQQQ  60
QGKVAMPGPQ VSVPTQAHTE WVPRSGFPLM SRFVLDHHGP SSPRLYSSSS SSSSSSVSGP  120
LLGFSATSSA SGSWVGHKRG REETGAGSSS QLLQDVTAPN RNIGDFRVPS QQSQPQSSSS  180
ATEAATTATS SEASASPSEE SGERRRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFDTA  240
EAAARAYDDA ALRFRGNRAK LNFPENVAPV APVRPMNVHA FPTIRTTVSA SPATLYSPAP  300
PQPPIFPFQG QGTSDSIRDY WEYSQLLKGS GDIHGLEQWF YESQMAALHS SQQMAALHSS  360
SSSLLSPSQS LSLSSSSSPT AFSPSSQLSS ASFPLFSGQQ VGLFRPPGDP SRGGGDGGSG  420
SGFPPSTWSD TSGYPPPPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22206267163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.156350.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1937400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786377e-54AB378637.1 Lotus japonicus LjERF17 mRNA for transcription factor AP2-EREBP, complete cds.
GenBankAP0097047e-54AP009704.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT11L13, TM1756, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570084.12e-80ethylene-responsive transcription factor ERF110-like isoform X1
RefseqXP_027189730.17e-81ethylene-responsive transcription factor ERF110-like isoform X3
TrEMBLA0A1S3E3Y94e-79A0A1S3E3Y9_CICAR; ethylene-responsive transcription factor ERF110-like isoform X1
TrEMBLA0A3Q7YF142e-79A0A3Q7YF14_CICAR; ethylene-responsive transcription factor ERF110-like isoform X3
STRINGXP_004496448.16e-78(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-19ethylene response factor 110