PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0889480.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 287aa    MW: 31778.1 Da    PI: 8.2454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0889480.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019222244223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp Cg  Fs+  +L+ H ++ H
  Lj5g3v0889480.1 222 QCPQCGAKFSSVTTLVEHVQKvH 244
                      7******************9988 PP
2zf-C2H217.79.9e-06259281223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C+k F+++ +L+ H  + H
  Lj5g3v0889480.1 259 VCPKCSKGFRDPVSLVEHVERdH 281
                      7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.07E-12650No hitNo description
Gene3DG3DSA:4.10.1110.101.4E-101050IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.5951059IPR000058Zinc finger, AN1-type
PfamPF014281.7E-131351IPR000058Zinc finger, AN1-type
SMARTSM001540.00371352IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.28E-857143No hitNo description
Gene3DG3DSA:4.10.1110.107.5E-1191158IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.80398147IPR000058Zinc finger, AN1-type
PfamPF014284.4E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.21101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.64221249IPR007087Zinc finger, C2H2
SMARTSM003550.0029221244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.05E-5222277No hitNo description
PfamPF138943.7E-4222244No hitNo description
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037258286IPR007087Zinc finger, C2H2
SMARTSM003555.5258281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTPEFPDLG KHCAVSDCKL VDFLPFTCDR CNQVYCLEHR SYIRHQCTKA DKLDLTVVIC  60
PLCAKGVRLV PDQDPNITWE NHVNTDCDPS NYEKVTKKKK CPAAGCKEIL VFSNTIKCRD  120
CMLDHCLKHR FGPDHKCPGP KKLETSFPFL SLLNKNRKEE RKPNSSSTPS SSKWSSSFLN  180
AASNIRASAE AGMSKLSGEI NQVWQTTKDG VGQNSGSEHV EQCPQCGAKF SSVTTLVEHV  240
QKVHERSGNQ SGVRVAIDVC PKCSKGFRDP VSLVEHVERD HGGSSRA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.172550.0floral bud| root
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0889480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366855.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 isoform X1
SwissprotQ0D5B91e-126SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A1S2Z2C71e-176A0A1S2Z2C7_CICAR; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
STRINGXP_004513765.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]