PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj4g3v2312410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 138aa MW: 15133.8 Da PI: 9.9455 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.1 | 9.7e-13 | 51 | 114 | 1 | 60 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkr 60 +W++ v +L+ea++ ++ +r+klk+++Weev+k++ ++ ++++qCk+k+e+++kr Lj4g3v2312410.1 51 EWSEGAVCTLLEAYEAKWVLRNRAKLKGQDWEEVAKHVssraNNTKSPKTQTQCKNKIESMKKR 114 5*************************************88777777889999**********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.3E-14 | 49 | 127 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 138 aa Download sequence Send to blast |
MENKVENQEH HHPASLLPNI HSTITAKEES PRKAIGGGGS GGGGDRLKRD EWSEGAVCTL 60 LEAYEAKWVL RNRAKLKGQD WEEVAKHVSS RANNTKSPKT QTQCKNKIES MKKRTCVTTS 120 TATNSGNSST FSITTPQQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.10931 | 1e-34 | pod| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj4g3v2312410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT140216 | 0.0 | BT140216.1 Lotus japonicus clone JCVI-FLLj-20G23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027342812.1 | 5e-52 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | I3SIB9 | 2e-72 | I3SIB9_LOTJA; Uncharacterized protein | ||||
STRING | XP_007148925.1 | 4e-51 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4994 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54390.1 | 5e-42 | sequence-specific DNA binding transcription factors |