PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2312400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Trihelix | ||||||||
Protein Properties | Length: 240aa MW: 26006.4 Da PI: 9.3775 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.3 | 7.1e-17 | 51 | 136 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++Weev+k++ ++ ++++qCk+k+e+++kry+ + +++ + s++p++++l+ Lj4g3v2312400.1 51 EWSEGAVCTLLEAYEAKWVLRNRAKLKGQDWEEVAKHVssraNNTKSPKTQTQCKNKIESMKKRYRSESATATDA----ASSWPLYSRLD 136 5*************************************88777777889999********************984....557*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.3E-20 | 49 | 137 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MENKVENQEH HHPASLLPNI HSTITAKEES PRKAIGGGGS GGGGDRLKRD EWSEGAVCTL 60 LEAYEAKWVL RNRAKLKGQD WEEVAKHVSS RANNTKSPKT QTQCKNKIES MKKRYRSESA 120 TATDAASSWP LYSRLDVLLR GTGPVSPLPQ PQTAATAAPS QSPHPSNNHA LMLLEPSLAV 180 SQAPYEPPPP PVAPPPAATA QNSYGSNGVD KLAKVDFSLV SFLLHFLIMD FTISRGFLPL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.10931 | 1e-173 | pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2312400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140216 | 0.0 | BT140216.1 Lotus japonicus clone JCVI-FLLj-20G23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027342812.1 | 7e-92 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | I3SIB9 | 1e-177 | I3SIB9_LOTJA; Uncharacterized protein | ||||
STRING | XP_007148925.1 | 1e-83 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4994 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-50 | sequence-specific DNA binding transcription factors |