PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0484480.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 315aa    MW: 35740.2 Da    PI: 7.0751
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0484480.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1072.3e-33622031128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                      lp+G+rF+P+d+e++ ++L++kv ++       ++++  +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      +
  Lj4g3v0484480.1  62 LPAGVRFDPNDQEIL-QHLEAKVLSDVrklhplIDEFIpTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHTPSKAYTTGTRKRRKVHtdeegsE 153
                      799***********9.99****998885664432222222333336**********.555666777******************7444465557 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+++v++ +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Lj4g3v0484480.1 154 TRWHKTGKTRPVFAGGGIVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 203
                      78************99*************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3758222IPR003441NAC domain
PROSITE profilePS5100533.92862222IPR003441NAC domain
PfamPF023653.9E-1563203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSKEIMTWHS DSDPEERGIE LITPTIVVND TKPSQIRTIT CPSCGTNIEL QDQAGINDLP  60
GLPAGVRFDP NDQEILQHLE AKVLSDVRKL HPLIDEFIPT LEGENGICYT HPEKLPGVSK  120
DGQIRHFFHT PSKAYTTGTR KRRKVHTDEE GSETRWHKTG KTRPVFAGGG IVKGFKKILV  180
LYTNYGRQKK PEKTNWVMHQ YHLGSNEEEK DGELVVSKVF YQTQPRQCGT NSITKDPYEK  240
VILTSQNQSV HDDDNLALKN AALVDYYHHP FMNYDHVGHN MDSSSQLIPN FVVQGDSSSF  300
IRLAMDANKA RFERK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0484480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347045.10.0NAC domain-containing protein 73-like
SwissprotF4HY611e-114NAC10_ARATH; NAC domain-containing protein 10
SwissprotO494591e-114NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0L9TLI21e-180A0A0L9TLI2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QZA71e-180A0A0S3QZA7_PHAAN; Uncharacterized protein
STRINGXP_004505101.11e-174(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-117NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]