PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3530640.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 283aa    MW: 31398.9 Da    PI: 6.9388
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3530640.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09756154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +++ +k+L
  Lj3g3v3530640.1  7 RKTQKADREKLRRDRLNEQFVELGNTLDPD----RPKNDKATILGDTIQLLKDL 56
                     6788999********************997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-12679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.798656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-13675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-6760No hitNo description
PfamPF000103.9E-7756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-71262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDCTAARKTQ KADREKLRRD RLNEQFVELG NTLDPDRPKN DKATILGDTI QLLKDLTSQV  60
GKLKDEYTML NEESRELAQE KNDLREEKAS LKSDIENLNN QYQQQLRSIY PWTAMDPSVM  120
MAPPPSYPYP VPMAVPPGPI PMQPYPFYAN QHPAVMPNPC STFVPYLAPN TLVEQQSTHY  180
VSPPLHPGSR SNVSGKQNSK NKSSRESKAD KNEDSTDVTT DLELKTPGSS ADQVLSSGER  240
KSSKLPRKDS SFTDGSSFGR CSSSHSVQDS SSSSVVGSKK SNE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.29240.0cell culture| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3530640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020238452.11e-161transcription factor bHLH121
RefseqXP_020238453.11e-161transcription factor bHLH121
RefseqXP_029131082.11e-161transcription factor bHLH121
RefseqXP_029131083.11e-161transcription factor bHLH121
SwissprotQ9LT232e-92BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A371HYH71e-160A0A371HYH7_MUCPR; Transcription factor bHLH121
STRINGXP_007133432.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.19e-84bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]