PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3107620.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family AP2
Protein Properties Length: 449aa    MW: 49800.1 Da    PI: 6.79
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3107620.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17145194155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lj3g3v3107620.2 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 194
                      78*******************......55************************997 PP
2AP238.92.2e-12237287155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ k +g
  Lj3g3v3107620.2 237 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYEKAAIKCNG 287
                      89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-16145202IPR016177DNA-binding domain
CDDcd000181.41E-11145201No hitNo description
PfamPF008475.0E-9145194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-17146202IPR001471AP2/ERF domain
PROSITE profilePS5103217.794146202IPR001471AP2/ERF domain
SMARTSM003801.2E-31146208IPR001471AP2/ERF domain
CDDcd000184.32E-25237297No hitNo description
SuperFamilySSF541713.73E-16237296IPR016177DNA-binding domain
PfamPF008475.8E-8237287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-15238296IPR001471AP2/ERF domain
PROSITE profilePS5103215.053238295IPR001471AP2/ERF domain
SMARTSM003805.0E-31238301IPR001471AP2/ERF domain
PRINTSPR003673.5E-5239250IPR001471AP2/ERF domain
PRINTSPR003673.5E-5277297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLDLNLNAYS ADSTQNGDSP SQMLSEEFPE GSWNQMAESG TSNSSVVNAD GSSNEDSCST  60
RPDDSFTFQF DILKVEGATD VVTRELFPVS GGVDGGNWQV HGAASFQRPV DLSFEQVRRN  120
SEMVKMVQPH QQVKKSRRGP KSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA  180
AARAYDRAAI KFRGVDADIN FNLIDYEDDL KQTENLSKEE FIHILRRQST GFSRGSSKYR  240
GVTLHKCGRW EARMGQLLGK KYIYLGLFDS EVEAARAYEK AAIKCNGREA VTNFEASTYE  300
QGRKSAAINE FGSQNLDLKL GIATPGPAPK ENREQLQFSS IPYNMHAGRS SRVVTEERPS  360
VWNGICPSFF PNEEGAEGIS IDPSKGLPNW AWQTHGQVNT APVPPFSAAA SSGFSISATF  420
PSTTIFQTRS TNSILPSPCF TPPQYYYHG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.121950.0protoplast| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3107620.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346039.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-115RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A445HLX50.0A0A445HLX5_GLYSO; Ethylene-responsive transcription factor RAP2-7 isoform B
STRINGGLYMA12G07800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-129related to AP2.7