PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2835370.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 234aa    MW: 26544.3 Da    PI: 8.9324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2835370.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-055981123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H+++H
  Lj3g3v2835370.1 59 YSCHFCKREFRSAQALGGHMNVH 81
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.61E-65686No hitNo description
PfamPF139121.7E-55982IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0115986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEEITTHEYL MWMKRKQILK SHIQAPIFAA CNNNSWEERA FAEDAARILG GCMWPPRSYS  60
CHFCKREFRS AQALGGHMNV HRRDRARLKQ NLSQPLQNSN HHKDHNFTAT GHLTSRPSTI  120
STRENSCKGC PDSEPKVKVN AKEEFLKGFG IHDYVETTLS VGQNSVFSKK VATDSCGELE  180
EISYKRPKIS IPVILKPCSN DRGLTFQSAE FVLGLKPGME DLDLELRLGK PQKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125481229superman protein
2l1o_A1e-125481229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.109331e-118root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2835370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203585.21e-109probable transcriptional regulator RABBIT EARS
TrEMBLA0A151R8G61e-108A0A151R8G6_CAJCA; Putative transcriptional regulator RABBIT EARS
STRINGGLYMA18G04030.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-26zinc-finger protein 10