PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v1717780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 395aa MW: 43248.8 Da PI: 6.0602 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 330 | 375 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +Av+YIk+Lq Lj3g3v1717780.1 330 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 375 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.307 | 324 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-16 | 327 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.05E-13 | 328 | 379 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-15 | 329 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 330 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-14 | 330 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDSDLQQQPP QMNPSPGLTR YRSAPSSYFS DIIDREFYEH IFNKPSSPET ERVFSRFMNS 60 FSGGDGGGGA TAEEDHPLKI SADSVKREQD QQGMNNEVLQ SSTEIINDYG NSVPHSQQSF 120 YQSAVKPPLP NHYLQSGGGG NGNSGLIRHS SSPAGLFSQI NIENMAGYAG VRGMGTLGAV 180 KNSLEGAKFS SARRLKNQPN YSSGMMSSIA EIGDRGNREN NPDSEAFAEG IGNDFITGFP 240 VGAWDDSVMM SDNVSGLKRF RDDDDAKPFS GLNGAETRNE TGGQSSSLVH QMSMPNTSSE 300 MAAIEKFLHF SDSVPCKIRA NRGFATHPRS IAERVRRTKI SERMRKLQDL VPNMDKQTNT 360 ADMLDLAVDY IKDLQKQAQT LSDCQAKCTC SHKQQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.2142 | 0.0 | cell culture| protoplast| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v1717780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139134 | 0.0 | BT139134.1 Lotus japonicus clone JCVI-FLLj-14E1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027341342.1 | 0.0 | transcription factor bHLH122-like isoform X2 | ||||
Refseq | XP_027341343.1 | 0.0 | transcription factor bHLH122-like isoform X2 | ||||
TrEMBL | I1MD93 | 0.0 | I1MD93_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G03740.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 7e-63 | bHLH family protein |