PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1113580.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 405aa    MW: 44893.6 Da    PI: 8.1944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1113580.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.8e-07232254123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  Lj3g3v1113580.1 232 HYCHVCGKGFKRDANLRMHMRAH 254
                      68*******************99 PP
2zf-C2H210.70.0016325348123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ C+ k Fs  s+L++H + +
  Lj3g3v1113580.1 325 YVCKRCNqKQFSVLSDLRTHEKHC 348
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-6230257No hitNo description
Gene3DG3DSA:3.30.160.605.6E-7232291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0069232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.508232259IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
SMARTSM00355110287320IPR015880Zinc finger, C2H2-like
SMARTSM0035523325347IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MISRATSSFQ SVHQGLQMFP PTQDLVSPSV EMISGSGSSP STSSLLFNLS VLKEKLNQVQ  60
TLVGIILSPN QTLPESTSLA ISSMNTTIQE IIVTATSMMF ACQHLALTTA TCTTNNQLHH  120
HQQSNHDHNK VPPSNFGNYR DVLSNIGTDI RSGQSLFSNT ESEALDSWFG ESYNNNNNNS  180
NVNDDDKSVA ISESNNCKEA IMSPGDGHEP VDTDDNDIIE LDVADLLAKY THYCHVCGKG  240
FKRDANLRMH MRAHGDEYKT SAALSKPIIK HKVGSENSLM SVKPKKYSCP QLGCRWNQKH  300
AKFQALKSMI CAKNHYKRSH CPKMYVCKRC NQKQFSVLSD LRTHEKHCGD LKWQCSCGTT  360
FSRKDKLMGH VAMFVGHHPA AMNSFSCSGK IEKQGLQMQN DGSSR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1113580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0066740.0AP006674.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT30L06, TM0369c, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027344193.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBLV7BYJ40.0V7BYJ4_PHAVU; Uncharacterized protein
STRINGXP_007150139.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.17e-91C2H2 family protein