PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0489500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 572aa MW: 61548.7 Da PI: 7.2776 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.8e-07 | 282 | 302 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Lj3g3v0489500.1 282 PCPDFRK-GACRRGDMCEYAHG 302 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 3.54E-16 | 9 | 153 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 7.4E-19 | 9 | 154 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 360 | 10 | 40 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 1.87E-18 | 10 | 137 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.9E-10 | 19 | 125 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.131 | 57 | 158 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.067 | 57 | 87 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 3.1E-5 | 58 | 73 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.1E-4 | 92 | 124 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.289 | 92 | 127 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 3.1E-5 | 111 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 277 | 303 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 282 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 282 | 304 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-5 | 282 | 302 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 310 | 340 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 35 | 312 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MKTLTVNTED SFSSLLELAS NNDFEGFKEL LYKDASSINE VGLWYVRQNG SKQIVLEHRT 60 PLMVAATYGS IDVLKVILSC PEADVNFACG VNKSTALHCA ASGGSVKAVD AVKLLLSAGA 120 DVNCVDANGN RAVDVIVVPP KLQGMKAILE ELLSDSASDG SVGGISVPVS VNSSSPGSPV 180 HFLSLENGMP CSPLGSPRSP GAAKLNDAGI STFSEKKEYP IDPSLPDIKN SIYTTDEFRM 240 FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC VPCPDFRKGA CRRGDMCEYA 300 HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTAEELRP LYVSTGSAVP SPRSSASAAS 360 VMDMAAAMSL LPGSPSSISS MSPSHFGQPM SPSASGISLS SPSWAQPNVP ALHLPGSNFQ 420 SSRLRSSLSA RDIPPEDLNM LPDFDGQQHV MNDLSCFLQP RSGAVSASRS CRSKILTPSN 480 LEDLFSAEFS SSPRYSDPAM ASVFSPTHRS AVMNQFQQLQ STLSPINTNM MSPKNVEHPL 540 LQASFGVASP GRMSPRSVEP ISPMGARLSA FP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5957 | 0.0 | floral bud| flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0489500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028194867.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A445HUI5 | 0.0 | A0A445HUI5_GLYSO; Zinc finger CCCH domain-containing protein 30 isoform A | ||||
STRING | GLYMA12G36600.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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