PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0275840.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 556aa    MW: 61295 Da    PI: 9.7615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0275840.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-055577123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Lj3g3v0275840.1 55 FICEVCNKGFQREQNLQLHRRGH 77
                     89*******************88 PP
2zf-C2H212.60.00042131153123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  Lj3g3v0275840.1 131 WKCEKCSKKYAVQSDWKAHSKTC 153
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121712.1E-55477IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.995577IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-75577No hitNo description
SMARTSM003550.00525577IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-55577IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035513096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-5119152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.55E-7126151No hitNo description
SMARTSM00355140131151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAAASSSSSP FFGIREENSS QITHLHQSPT AASSAALTTM PQKKRRNQPG TPSKFICEVC  60
NKGFQREQNL QLHRRGHNLP WKLKQKSNKE PRRKVYLCPE PTCVHHDPSR ALGDLTGIKK  120
HYSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SGITHRALCD  180
ALAQESARLQ NGLTPLGTNL YGTPTNHMTL GLSQIGTQIS QQLQNHNQNA TNNNTLRLTG  240
AAKFEHLIPS LNQSSSFGVQ HSPQQSIPSS AFFMTEPNQT FDQEPHQGPF SNKNLNGLMQ  300
LPDLQGNNNT NSNSPSNLFN LSFFPNSTMM DQFNNHQGTT SLYMNNNNNN PIISDHHQVG  360
NSGLSSSLFG NSLQHENMSS PHMSATALLQ KAAQMGSTAT TTKGAGGSSI LIRGMSTSSS  420
TYNNNDSRSD TERDHVSDNK IATFGSDQRR GEGGNVIMRT NMENDRRNLH GLMINSITNG  480
NNTSIFGNMQ GNEKLPQNLD LSFGGSDKLT LDFLGVGGMM RNINSGGEHQ QQRVMDPHDL  540
KSAQSTQLHF GSSTMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33127191367Zinc finger protein JACKDAW
5b3h_F5e-33127191367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.64920.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0275840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064230.0AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366526.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366527.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366529.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366530.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366531.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366532.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366533.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366534.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366535.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A394DE880.0A0A394DE88_LUPAN; Uncharacterized protein
STRINGGLYMA20G32480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-82C2H2-like zinc finger protein