PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2449260.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 322aa    MW: 36366.1 Da    PI: 8.5468
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2449260.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.4e-191099198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     f+k +++s+v +  +l lp +f+eeh  +k +  +++lede+g ++e  +   +k+++  l++GW+ F+ +++L++gD +vF+l++ s+f  ++ +
  Lj2g3v2449260.1 10 FVKSMVRSHVYSCFWLGLPSRFCEEHL-PK-TLYDMILEDEDGSEYEAVY--IGKRSG--LSGGWRAFALDHKLDDGDALVFELVEASRF--KIYI 97
                     89************************5.44.4579***************..555544..9***********************998999..8888 PP

                     E- CS
               B3 97 fr 98
                     +r
  Lj2g3v2449260.1 98 CR 99
                     87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-20499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-22599IPR015300DNA-binding pseudobarrel domain
CDDcd100179.15E-28899No hitNo description
PfamPF023628.1E-181099IPR003340B3 DNA binding domain
SMARTSM010197.8E-2510101IPR003340B3 DNA binding domain
PROSITE profilePS5086312.42110101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNLQTSYPSF VKSMVRSHVY SCFWLGLPSR FCEEHLPKTL YDMILEDEDG SEYEAVYIGK  60
RSGLSGGWRA FALDHKLDDG DALVFELVEA SRFKIYICRA FPESVEDEED TLEEEGTTRE  120
AKATKVKKAA SNAESKSNKS KKPKQAIVHE TKESANQNTL KEEGRTRASK RLKAAGSSES  180
EESNKVKKPK QAIMHETNES ENSQDSLLES SIDNEVKPAK KTKSSQKEMK KKYTLPVTGE  240
SKGEAPIETM KPKEAVLYQQ SELGDSGKAE QLLLENEVVK PNPCKKKELQ DAENELKKVE  300
PIEQASKRPR KQRAVKLFRK KV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2449260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028215236.19e-96putative B3 domain-containing protein At5g58280 isoform X3
TrEMBLA0A445LTG62e-95A0A445LTG6_GLYSO; Putative B3 domain-containing protein isoform A
STRINGGLYMA02G40400.32e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-42B3 family protein