PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3331700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Trihelix | ||||||||
Protein Properties | Length: 451aa MW: 51399.8 Da PI: 6.8248 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67 | 3.9e-21 | 119 | 216 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpy 81 +Wt++ v +L+++++ ++++ g+ +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++t ++++++ ++ Lj1g3v3331700.1 119 KWTDNIVGLLVAVVSCVDDDGTIGAgmerakrkygalQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTcCQVVENPAL 212 7**************7777777654455666778888**********************************************76899999999 PP trihelix 82 fdql 85 +d++ Lj1g3v3331700.1 213 LDSM 216 9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-16 | 117 | 243 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MNNSGLGGGF LAGPSGGILD LESPFRRHQQ TQLGHPSVTG QQHMNVMSGL DNDHPIGLVE 60 VKSLNAALNF GKGKAVALCN HVNINDLSED DELGYAEDGN CEHLDGGKSK KGSTWQRMKW 120 TDNIVGLLVA VVSCVDDDGT IGAGMERAKR KYGALQKKGK WKTVSKIMIS KGCHVSPQQC 180 EDKFNDLNKR YKRLNEILGR GTCCQVVENP ALLDSMPNLS AKMKDAVRKI LSSKHLFYKE 240 MCAYHNGQRL PNSYDLDLHG YSLEHGRDSR DNNGSEDEAE DNNESEDDGV DNEININARG 300 DGGRMEELCD RNKQSEEDGH FWPRSVRMDK FQVEMDKIFQ DPAKPLWEQR EWIKMQLLQL 360 QEENVGYQAQ ALELEKQRFK WLRYCSKKDR ELEKLRLENK KMKLENEHRI LKLKQKEHET 420 DCNRSEMSLD PASHGINRPQ RREHINLARQ Q |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3331700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486956.1 | 0.0 | uncharacterized protein LOC101493778 isoform X1 | ||||
TrEMBL | A0A1S2XBW1 | 0.0 | A0A1S2XBW1_CICAR; uncharacterized protein LOC101493778 isoform X1 | ||||
STRING | XP_004486956.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 4e-85 | sequence-specific DNA binding transcription factors |