PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1049410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRF | ||||||||
Protein Properties | Length: 504aa MW: 54668.2 Da PI: 8.2543 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.8 | 1.1e-24 | 139 | 182 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e Lj1g3v1049410.1 139 DPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVE 182 79***************************************998 PP | |||||||
2 | QLQ | 47.5 | 5.5e-17 | 85 | 115 | 2 | 32 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FT +Q+ +L +Q+++yKy++a++PvP++Ll Lj1g3v1049410.1 85 PFTSSQWRELQRQAMIYKYMMASVPVPSDLL 115 8****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-7 | 84 | 120 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-11 | 85 | 115 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.243 | 85 | 120 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.739 | 139 | 183 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.7E-20 | 140 | 182 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MGEEPFSNNK MTMMLLHQHQ NHHHRPFSSP FDSVHGGCGP TFSSSCVLSP APIEGAVIRP 60 PLQQPFETPT FKSPGCGGMA TLGFPFTSSQ WRELQRQAMI YKYMMASVPV PSDLLISTTS 120 LMPTTLDGGF NLRLSNGTDP EPGRCRRTDG KKWRCSRDVA PNHKYCERHM HRGRPRSRKP 180 VEVHTNNTMN NNSSLPIKRA RHDCNPFSSA GDVTVAVSNR KNGSQSHFLA NSQPYIEKSS 240 FSLDNFGLKA ANFGSLASVS SNREPRGLEW MLNGDPISLG ASDSGWHSLM HDKKVGGSCN 300 NTEPQYLNSF ALYSSGLDHH DRSLPPFLNP LVVPMEHLQS EKPRGFIDAW SNTETREINA 360 NKNSTSSIGK LTLSSLDLSM GGAVHDEMGT IGMGLGLMEH DGNTREDTKI SLSNWLNPSP 420 WVASSTPGGP LAEVLRPSTI TSDAATSGPS SPAVTHVESS RTMVSSPSGV LQKALASFSD 480 SSSNSSPTIA SSRASSEITL LKFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1049410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-52 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027334397.1 | 0.0 | growth-regulating factor 7 isoform X1 | ||||
TrEMBL | A0A0L9UDP8 | 0.0 | A0A0L9UDP8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3REI0 | 0.0 | A0A0S3REI0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007136458.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-39 | growth-regulating factor 2 |