PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0251039.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 245aa MW: 27088.6 Da PI: 6.7931

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0251039.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Lj0g3v0251039.1 15 KQRLRWTHELHGRFVDAVAQLGGPDRATPKGVLRVMGVEGLTIYHVKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.073	12	72	IPR017930	Myb domain
SuperFamily	SSF46689	1.67E-17	14	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-32	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-25	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-8	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	6.3E-23	101	147	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDPVNEPNNP NFASKQRLRW THELHGRFVD AVAQLGGPDR ATPKGVLRVM GVEGLTIYHV 60 KSHLQKYRLA KYIHDSSLDG EIADKKETTD MLSNQDGSSG MQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGNYLKK IIEEQQRLSG VLSERLDSGI SPLVPGDMCQ KDGNKTDPTT 180 PAPSSECPLL EKAAKERAPA ESLSIGESFS SHHEPRTPDS CCHGGSSVSS PEGEMSAKKQ 240 RVSLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	15	72	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.20916	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0251039.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027331247.1	1e-139	myb family transcription factor PHL7-like isoform X2
Swissprot	Q9SJW0	1e-105	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A5C966	1e-130	A5C966_VITVI; Uncharacterized protein
STRING	VIT_00s0475g00040.t01	1e-129	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-91	G2-like family protein