PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj0g3v0224509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 150aa MW: 17348.5 Da PI: 8.4847 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.8 | 8.2e-14 | 88 | 150 | 2 | 66 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66 +n Y+ ++GF+vrk++ +k+ ++g i + ++vCskeg r+++k++ + ++r etrt+C a++ Lj0g3v0224509.1 88 LWNGYGGKIGFNVRKQYFNKN-KDGMILTIRYVCSKEGIRKPDKRD-CVTTKHRLETRTNCPARI 150 799**************9998.8888******************99.899999*********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-10 | 88 | 150 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
MDADEQLESS TTAKDADEHR TSPTVIMDTD EHLKSLTTAK DDRHHISITK DTRMSNDFVA 60 AQRTSNKDDE WKPQVGLLFN TLEETWKLWN GYGGKIGFNV RKQYFNKNKD GMILTIRYVC 120 SKEGIRKPDK RDCVTTKHRL ETRTNCPARI |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.9112 | 1e-152 | floral bud| pod| protoplast |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj0g3v0224509.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT139659 | 0.0 | BT139659.1 Lotus japonicus clone JCVI-FLLj-7I10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024642355.1 | 4e-32 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | I3SGR2 | 1e-106 | I3SGR2_LOTJA; Uncharacterized protein | ||||
STRING | AES79799 | 5e-25 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-11 | FAR1 family protein |