PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0224509.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 150aa    MW: 17348.5 Da    PI: 8.4847
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0224509.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.88.2e-1488150266
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66 
                       +n Y+ ++GF+vrk++ +k+ ++g i + ++vCskeg r+++k++   + ++r etrt+C a++
  Lj0g3v0224509.1  88 LWNGYGGKIGFNVRKQYFNKN-KDGMILTIRYVCSKEGIRKPDKRD-CVTTKHRLETRTNCPARI 150
                      799**************9998.8888******************99.899999*********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1088150IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDADEQLESS TTAKDADEHR TSPTVIMDTD EHLKSLTTAK DDRHHISITK DTRMSNDFVA  60
AQRTSNKDDE WKPQVGLLFN TLEETWKLWN GYGGKIGFNV RKQYFNKNKD GMILTIRYVC  120
SKEGIRKPDK RDCVTTKHRL ETRTNCPARI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.91121e-152floral bud| pod| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0224509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1396590.0BT139659.1 Lotus japonicus clone JCVI-FLLj-7I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642355.14e-32protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI3SGR21e-106I3SGR2_LOTJA; Uncharacterized protein
STRINGAES797995e-25(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-11FAR1 family protein