PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0155359.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 371aa MW: 41822 Da PI: 7.6525

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0155359.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.3	4.8e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Lj0g3v0155359.1 16 LPPGFRFHPTDEELISHYLYKKVIDIEFSA-RAIGEVDLNKCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR 108 79************************99.89***********888999************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgek++Wvmheyrle Lj0g3v0155359.1 109 -GKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 142 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-65	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.675	16	166	IPR003441	NAC domain
Pfam	PF02365	3.5E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MENISVLSKE EDQMDLPPGF RFHPTDEELI SHYLYKKVID IEFSARAIGE VDLNKCEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV 120 FYKGRAPKGE KSNWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSSAG KKTHISGIMR 180 LDSLGLGHHE LGSSLPPLTD SLSSINKTKA LLDSAYVPCF SNQIDVQRNH QGGIYDSFSN 240 SIYGVSSNPL EFFPRVPPSS GSLYSTTQGV QVPSSLPFPG SVYSMQDQAI LRALYENNAS 300 NFVNGFKAER DMVSVSQETD LTTDMNAETS SVVSNFEMGR RSFENQNQNQ NQNPPPASAA 360 GVDHDHGLWS Y

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MENISVLSKE EDQMDLPPGF RFHPTDEELI SHYLYKKVID IEFSARAIGE VDLNKCEPWD  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV  120
FYKGRAPKGE KSNWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSSAG KKTHISGIMR  180
LDSLGLGHHE LGSSLPPLTD SLSSINKTKA LLDSAYVPCF SNQIDVQRNH QGGIYDSFSN  240
SIYGVSSNPL EFFPRVPPSS GSLYSTTQGV QVPSSLPFPG SVYSMQDQAI LRALYENNAS  300
NFVNGFKAER DMVSVSQETD LTTDMNAETS SVVSNFEMGR RSFENQNQNQ NQNPPPASAA  360
GVDHDHGLWS Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	1e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	1e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	1e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	1e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	1e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	1e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	1e-55	13	172	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0155359.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027331675.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-143	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A072URG4	0.0	A0A072URG4_MEDTR; NAC transcription factor-like protein
STRING	GLYMA17G10970.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-135	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]