PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0117159.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 635aa    MW: 72443.5 Da    PI: 6.6843
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0117159.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34e-09428468346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE + l++a  q+G++ Wk+Ia+ ++  + + ++k+ w+ 
  Lj0g3v0117159.3 428 KWTPEELDFLLKAQDQHGSD-WKLIAEALN--KHRLHVKDTWRR 468
                      8*******************.********8..567788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.391348416IPR017877Myb-like domain
SMARTSM007171.2E-4352423IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-7354442IPR009057Homeodomain-like
PROSITE profilePS5129410.033423474IPR017930Myb domain
SMARTSM007173.9E-4425472IPR001005SANT/Myb domain
SuperFamilySSF466895.59E-9427483IPR009057Homeodomain-like
CDDcd001670.00136428457No hitNo description
PfamPF139214.5E-12429487No hitNo description
Gene3DG3DSA:1.10.10.607.0E-8443479IPR009057Homeodomain-like
PROSITE profilePS500907.306471540IPR017877Myb-like domain
SMARTSM007178.8475543IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-5480541IPR009057Homeodomain-like
SuperFamilySSF466895.7E-5520600IPR009057Homeodomain-like
PROSITE profilePS500907.445542595IPR017877Myb-like domain
SMARTSM0071763546597IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MTEESDSQGN KLEKKKLHKK SKRPRDCETS NGGDDSVVTE ERQGKKMKLD KVFSKEDGRT  60
EDEDDDQGKE MKKNKKEKLI EESKSEEEYN QLRSNEGEDG DQGKRMKKKK KLSDKSKSKN  120
SEFNSNEGED NDRGKEMKKN KKEKLIEESK SEEEYNQLRS NEGEDGDQGK RMKKKKKLSD  180
KSKSKNSEFN SNDGGSSLAS VEEGDAKACG DVTEVDDQSK KKKTKKKAKA GTDESTIPAA  240
HGEKMKKKKL SDKSKSKISE FNSNEGDPSL ASVEEGDAKA CGDVTEVDDQ SKKKKTKKKA  300
KAGTDESTIP AAHGETSKPK RVTFSDQVEV YGDQVEVCGD QVEVCGDDDL VRGKRFTPEE  360
DEKIKEAVSD YIESHGLGDE GLKMILHCMS HPEVRGCWKE IGEALPHRPH QSVYYRAHII  420
YERDEARKWT PEELDFLLKA QDQHGSDWKL IAEALNKHRL HVKDTWRRIR RTNANTGRWS  480
QDEYQRLFDL VNKDLCARAA EDCRKNKHGM LRDNVSWEAI SDEFGSRASA LCCMKWYQQL  540
TSPMVADGIW SDTDDYRLVN ALYALDACSM EEVDWDNLLE HRSGDVCRKR WHQMVRNIRE  600
YAGKSFAEQV EILSKRYRPD LVEAREAFDS KPVVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175QGKRMKKKK
2169175KRMKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0117159.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541381.20.0RNA polymerase I termination factor
RefseqXP_006594063.10.0RNA polymerase I termination factor
RefseqXP_006594064.10.0RNA polymerase I termination factor
RefseqXP_028198132.10.0RNA polymerase I termination factor
RefseqXP_028198133.10.0RNA polymerase I termination factor
RefseqXP_028198134.10.0RNA polymerase I termination factor
RefseqXP_028198135.10.0RNA polymerase I termination factor
TrEMBLA0A0B2SVJ40.0A0A0B2SVJ4_GLYSO; Cyclin-D-binding Myb-like transcription factor 1
TrEMBLI1LYQ80.0I1LYQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G19060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-115MYB_related family protein