PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0117159.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 635aa MW: 72443.5 Da PI: 6.6843 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4e-09 | 428 | 468 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE + l++a q+G++ Wk+Ia+ ++ + + ++k+ w+ Lj0g3v0117159.3 428 KWTPEELDFLLKAQDQHGSD-WKLIAEALN--KHRLHVKDTWRR 468 8*******************.********8..567788888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.391 | 348 | 416 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.2E-4 | 352 | 423 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-7 | 354 | 442 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.033 | 423 | 474 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-4 | 425 | 472 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.59E-9 | 427 | 483 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00136 | 428 | 457 | No hit | No description |
Pfam | PF13921 | 4.5E-12 | 429 | 487 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-8 | 443 | 479 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.306 | 471 | 540 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.8 | 475 | 543 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-5 | 480 | 541 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.7E-5 | 520 | 600 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.445 | 542 | 595 | IPR017877 | Myb-like domain |
SMART | SM00717 | 63 | 546 | 597 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MTEESDSQGN KLEKKKLHKK SKRPRDCETS NGGDDSVVTE ERQGKKMKLD KVFSKEDGRT 60 EDEDDDQGKE MKKNKKEKLI EESKSEEEYN QLRSNEGEDG DQGKRMKKKK KLSDKSKSKN 120 SEFNSNEGED NDRGKEMKKN KKEKLIEESK SEEEYNQLRS NEGEDGDQGK RMKKKKKLSD 180 KSKSKNSEFN SNDGGSSLAS VEEGDAKACG DVTEVDDQSK KKKTKKKAKA GTDESTIPAA 240 HGEKMKKKKL SDKSKSKISE FNSNEGDPSL ASVEEGDAKA CGDVTEVDDQ SKKKKTKKKA 300 KAGTDESTIP AAHGETSKPK RVTFSDQVEV YGDQVEVCGD QVEVCGDDDL VRGKRFTPEE 360 DEKIKEAVSD YIESHGLGDE GLKMILHCMS HPEVRGCWKE IGEALPHRPH QSVYYRAHII 420 YERDEARKWT PEELDFLLKA QDQHGSDWKL IAEALNKHRL HVKDTWRRIR RTNANTGRWS 480 QDEYQRLFDL VNKDLCARAA EDCRKNKHGM LRDNVSWEAI SDEFGSRASA LCCMKWYQQL 540 TSPMVADGIW SDTDDYRLVN ALYALDACSM EEVDWDNLLE HRSGDVCRKR WHQMVRNIRE 600 YAGKSFAEQV EILSKRYRPD LVEAREAFDS KPVVG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 175 | QGKRMKKKK |
2 | 169 | 175 | KRMKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0117159.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541381.2 | 0.0 | RNA polymerase I termination factor | ||||
Refseq | XP_006594063.1 | 0.0 | RNA polymerase I termination factor | ||||
Refseq | XP_006594064.1 | 0.0 | RNA polymerase I termination factor | ||||
Refseq | XP_028198132.1 | 0.0 | RNA polymerase I termination factor | ||||
Refseq | XP_028198133.1 | 0.0 | RNA polymerase I termination factor | ||||
Refseq | XP_028198134.1 | 0.0 | RNA polymerase I termination factor | ||||
Refseq | XP_028198135.1 | 0.0 | RNA polymerase I termination factor | ||||
TrEMBL | A0A0B2SVJ4 | 0.0 | A0A0B2SVJ4_GLYSO; Cyclin-D-binding Myb-like transcription factor 1 | ||||
TrEMBL | I1LYQ8 | 0.0 | I1LYQ8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G19060.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-115 | MYB_related family protein |