PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0086419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TALE | ||||||||
Protein Properties | Length: 542aa MW: 60147.2 Da PI: 5.7158 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.3e-09 | 461 | 499 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+++e+ LA k gLt +qV++WF N R + Lj0g3v0086419.1 461 MFQNflHPYPKEAEKHLLAVKSGLTRSQVSNWFINARVR 499 5887779******************************88 PP | |||||||
2 | BELL | 68.7 | 1.1e-22 | 334 | 402 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 q+ ++ k++Ll ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS ++ L+++i+ qi Lj0g3v0086419.1 334 QAAESIKSQLLMLLQLVDNRYSQCLDEVHTVVSAFHAATELDP-HIHAHFALQTISLLYKDLRERISTQI 402 6778889************************************.************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.1E-18 | 265 | 400 | IPR006563 | POX domain |
Pfam | PF07526 | 2.0E-24 | 271 | 399 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.208 | 440 | 503 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.55E-11 | 443 | 504 | No hit | No description |
SMART | SM00389 | 5.3E-6 | 443 | 507 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-15 | 445 | 512 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 446 | 509 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.9E-15 | 460 | 499 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MENAMFSDPL DMADQNSTCI EDNITQHLIP KPLIYCCSFD LNSQSHIING IPILSGEQTE 60 HISNAQLDGS FINPVTIANS NSFATSQGMT FMLDASNPTG NSDFEDHLAG GRPISCASVP 120 ARIGLQENLE NSASLEVSGP FVFNNWQDSS NPLSANFCSS GYDEAPSNGR WIFNKFLKAS 180 EADLTGLLPY SSIGNIEPNG WSSSNVANLA NHAYNSSNCS NELSLSLASS SPTTGQCSDL 240 THSMNGTSSG NSMEVSMSMD SNGRFQFSPA ILGSRYLSGI QEILVQIATY SFENLEEVNY 300 SAAGVRGGNK STSAFTPKRR IATNHNADSP LQGQAAESIK SQLLMLLQLV DNRYSQCLDE 360 VHTVVSAFHA ATELDPHIHA HFALQTISLL YKDLRERIST QILAMGSNFN MSCSEEEKEW 420 SMETSFVQKQ WALQQLKRKD QLWRPQRGLP ERSVSVLRAW MFQNFLHPYP KEAEKHLLAV 480 KSGLTRSQVS NWFINARVRL WKPMIEEMYA EMSRRKACRN EEGKETSHKS RISLNNQMFN 540 IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-15 | 449 | 507 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-15 | 449 | 507 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 4e-15 | 449 | 506 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-15 | 449 | 506 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}. | |||||
Uniprot | TISSUE SPECIFICITY: Most abundant in flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0086419.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027332977.1 | 0.0 | homeobox protein ATH1-like | ||||
Swissprot | P48731 | 2e-99 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | V7CUC5 | 0.0 | V7CUC5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007160994.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 3e-98 | homeobox gene 1 |
Publications ? help Back to Top | |||
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