PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0037529.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family AP2
Protein Properties Length: 435aa    MW: 47884.2 Da    PI: 7.9822
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0037529.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-17138187155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lj0g3v0037529.2 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 187
                      78*******************......55************************998 PP
2AP242.41.8e-13230280155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a++k +g
  Lj0g3v0037529.2 230 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAALKCNG 280
                      89********.7******5553..2.26**********99**********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16138195IPR016177DNA-binding domain
PfamPF008471.9E-9138187IPR001471AP2/ERF domain
PROSITE profilePS5103217.82139195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-17139195IPR001471AP2/ERF domain
CDDcd000185.27E-11139194No hitNo description
SMARTSM003804.6E-31139201IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17230288IPR016177DNA-binding domain
PfamPF008475.7E-9230280IPR001471AP2/ERF domain
CDDcd000184.08E-25230288No hitNo description
Gene3DG3DSA:3.30.730.109.9E-16231288IPR001471AP2/ERF domain
PROSITE profilePS5103215.712231288IPR001471AP2/ERF domain
SMARTSM003803.4E-31231294IPR001471AP2/ERF domain
PRINTSPR003671.4E-5232243IPR001471AP2/ERF domain
PRINTSPR003671.4E-5270290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MLDLNLNAES THNDDSFLEE AVSSGTSNSS IVNAEGSSNG VGDEDSCSTR AAGHVITFDF  60
GILKVEGVGS DVAAATRELF PVIAGSWPVP TFVAKKSVVD LSLDHHRSEN GEVKVVQVPQ  120
PQQPQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR  180
AAIKFRGLDA DINFNLVDYE DDLKQMKNLS KEEFVHILRR HSTGFSRGSS KYRGVTLHKC  240
GRWEARMGQF LGKKYIYLGL FDSEVEAARA YDKAALKCNG REAVTNFEPC TYESEMKPEA  300
INEGGNHNLD LNLGMATPGH GPKDNRGHLQ SQPVPYNMHP GRSSKMETNA NSVIGDPSLK  360
RLVVTQDRPS VWNSTYSRFF PTEERAERIG LDPSKGHSNW AWQTHGQVSG ATPVPPFSSA  420
ASSGFSISAT FPPPT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0037529.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434100.0BT143410.1 Lotus japonicus clone JCVI-FLLj-21N13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028190357.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_028190358.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8AXC31e-104AP21_ORYSI; APETALA2-like protein 1
SwissprotQ9SK031e-105RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A445IDH50.0A0A445IDH5_GLYSO; Ethylene-responsive transcription factor RAP2-7 isoform A
STRINGGLYMA13G40470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-115related to AP2.7