PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 298aa    MW: 32713.3 Da    PI: 5.6044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-112262661055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  LPERR12G14550.1 226 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 266
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14218282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-13221277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-13225270No hitNo description
PfamPF000102.0E-8226266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEAGGLIADM SWNVFDLPSH GEESEMMAQL LSAFPIHGEE EGNQELPWFD QSSNPCHYDC  60
NASSSAYSNS NASSFPAPSE YEGYCLSDSN ESIAPHDLSM VQVQGAAEFL SVIPNNYFDL  120
YGNGEQCHKD LDSISGTKKR KHSAEEEFHG QTRGSKCAKK AEPKRAKKAK QTVEKDTSVT  180
IPNGSCCTSD NDSSSSQGAA DAGATSKGKA RAGRGAATDP QSLYARKRRE RINERLKTLQ  240
NLVPNGTKVD ISTMLEEAVH YVKFLQLQIK LLRSDDMWMY APIAYNGMNI GLDLNIHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14550.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548522e-93AL954852.5 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149682e-93AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619496.10.0transcription factor bHLH85
SwissprotQ84WK02e-51BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A0D9Y1010.0A0A0D9Y101_9ORYZ; Uncharacterized protein
STRINGLPERR12G14550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]