PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G01100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 318aa    MW: 35182.1 Da    PI: 6.5117
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G01100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.21.6e-23121183358
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEE....EEES--SS CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvvei....tYegeHnh 58 
                      Dgy+WrKYGqK+++g+++prsYYrCt +   gC++kk v+r+++d+ +  +     Y +eH++
  LPERR12G01100.1 121 DGYQWRKYGQKQIEGAKYPRSYYRCTNSteqGCQAKKTVQRNDDDGGAAATrytvSYISEHTC 183
                      9************************9988889*************987765000055677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-25104185IPR003657WRKY domain
SuperFamilySSF1182904.18E-22112184IPR003657WRKY domain
SMARTSM007741.0E-30119185IPR003657WRKY domain
PfamPF031061.9E-23121184IPR003657WRKY domain
PROSITE profilePS5081120.931121182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESEAYWRMS RELEADELQH LLFFRPSLTQ QATSSGECLP PAGVTKTVSG GGRRRGRKRL  60
RPADNNNVKL RRRLQEEDDH LQEVADGAAN SKPLPRPCTK TSRRKQQTTT STMVTTVPDF  120
DGYQWRKYGQ KQIEGAKYPR SYYRCTNSTE QGCQAKKTVQ RNDDDGGAAA TRYTVSYISE  180
HTCKSINESV APVILETTVR TSTNQPIATV GSCSAESPAI SSTTSDIITA STWSSGETSR  240
SDCSWDSTST ITPAMATNYS GNIINGGVDV EEMDLIRGPI RSPVHIMADG NYWMDDLLLN  300
NGFMDDTILF NGSICQLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-161211841069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G01100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149687e-41AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005007e-41BX000500.4 Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126207e-41CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616434.11e-74probable WRKY transcription factor 33
TrEMBLA0A0D9XWA40.0A0A0D9XWA4_9ORYZ; Uncharacterized protein
STRINGLPERR12G01100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-17WRKY family protein