PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G09930.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 394aa    MW: 41292.6 Da    PI: 7.621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G09930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08209269455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...........TTS-.STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas........kapskK.lsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +         +++ +    Ka +L + ++Y++sLq
  LPERR11G09930.1 209 SHSLAERVRREKISERMKLLQDLVPGCNkvmklrqkHGNFTQvTGKAVMLDEIINYVQSLQ 269
                      8*************************888****999555555599***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.17E-11203273No hitNo description
SuperFamilySSF474591.7E-14203286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326205268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-15205285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5209269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11211274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAHDGFLGAG GSFHHAHLAP WPLPLDLAAL QAHHHALIDG CWENEPATAA VGSGAGAAMM  60
MDELASRLCG GGVQSPPPSS RYASCYSTPV GSPASKPAAA GGVHHQLPAS DGSSSDAPCR  120
KRKAATGGKA RGKDAATAIA KSPEPEKKAK KCKLSSSLDA AAVGDEETKP VAGEGGVHGG  180
NGKGKEVAGG EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVMK  240
LRQKHGNFTQ VTGKAVMLDE IINYVQSLQR QVEFLSMKLS TVNPQLDFDV DNFIPKDASE  300
PSMSLPLSLP QPQPPLSYSP EGASPAICYA SSQGTAMQSV VTSTKAFEMA ATFANHGIPV  360
PSLDGFHSAN SQVGSCMWED DLQSVVQMGF RGNA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G09930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465234e-58AC146523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence.
GenBankAK2889704e-58AK288970.1 Oryza sativa Japonica Group cDNA, clone: J090085B10, full insert sequence.
GenBankAP0149674e-58AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615633.11e-161transcription factor BHLH089-like isoform X2
TrEMBLA0A0D9XRR50.0A0A0D9XRR5_9ORYZ; Uncharacterized protein
STRINGLPERR11G09930.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-50bHLH family protein