PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR11G03530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 436aa MW: 49810.6 Da PI: 6.5475 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 87.1 | 2.1e-27 | 116 | 212 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++m+e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d LPERR11G03530.1 116 KWTDSMVKLLITAVSYMGEDPGADLgggrrnfsimQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHALLD 209 7*********************9744456677788**********************************************55*********** PP trihelix 84 qle 86 +++ LPERR11G03530.1 210 RMD 212 *97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0083 | 113 | 185 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.6E-20 | 114 | 237 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 436 aa Download sequence Send to blast |
MEGSNQPPRN TMQGHPYGSL DFHGVPVQMH PPNSGKQVFN QPQIPGNFTI SVDRITEPDN 60 ISDGVQLGQH GKIAHHHHKH HSKNHGSDEE DHDMNEDAPD THSGKDKKGS AWHRMKWTDS 120 MVKLLITAVS YMGEDPGADL GGGRRNFSIM QKKGKWKAIS KVMGERGCHV SPQQCEDKFN 180 DLNKRYKRLT DILGRGTACN VVENHALLDR MDISDKMKED ARKILSSKHL FYEEMCSYHN 240 NNRISLPEDP ALQQSLLLAL RCKEDNDFRR DASGDAEQDD DHSEDSDYEE NGEDHQAIDT 300 NIRGPSMHKR PWYMVDDVGF VTSCSNDGSG RSDPYNAVLD INKAFADGTD LALVQKDLAL 360 KSHEIQKHRL QIEVKAVRLA KQRLRWEKFR KNKDRELEMM ALENEQMMLE NKRFELDLRS 420 KELELEVKIK GNDNRA |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR11G03530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC120533 | 0.0 | AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence. | |||
GenBank | AK101154 | 0.0 | AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615140.1 | 0.0 | uncharacterized protein LOC4349866 isoform X1 | ||||
Refseq | XP_015615141.1 | 0.0 | uncharacterized protein LOC4349866 isoform X1 | ||||
Refseq | XP_015615142.1 | 0.0 | uncharacterized protein LOC4349866 isoform X2 | ||||
TrEMBL | A0A0D9XPE6 | 0.0 | A0A0D9XPE6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G03530.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2920 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21200.1 | 4e-91 | sequence-specific DNA binding transcription factors |