PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G03230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 150aa MW: 17205.6 Da PI: 10.6044 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.8 | 1.6e-14 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+ +r tf k ++g++KKA+EL +LC+++ ++i+ ++ LPERR11G03230.1 10 QILNDAQRRATFKKWLKGLMKKAKELATLCGMDTCLIVHGK 50 58899*********************************986 PP | |||||||
2 | SRF-TF | 43.5 | 4.1e-14 | 78 | 117 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n +r tf kR++g++KK +EL +LC ++ ++i++++ LPERR11G03230.1 78 ILNGAQRRATFKKRLKGLMKKDKELATLCFMDTCLIVYGK 117 778899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.021 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-11 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.26E-17 | 2 | 60 | No hit | No description |
Pfam | PF00319 | 1.2E-13 | 11 | 49 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.769 | 68 | 116 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.27E-16 | 68 | 145 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-9 | 68 | 127 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-8 | 70 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-12 | 78 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-8 | 90 | 105 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MTRGRVKLQQ ILNDAQRRAT FKKWLKGLMK KAKELATLCG MDTCLIVHGK GEAHVTEVWP 60 LILEAANMTR GRVKLQQILN GAQRRATFKK RLKGLMKKDK ELATLCFMDT CLIVYGKGEA 120 YATEVWPLIL EAASVLEHFM AIPWKEYTRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G03230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629573.1 | 7e-26 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D9XP99 | 1e-106 | A0A0D9XP99_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G03230.1 | 1e-107 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-09 | AGAMOUS-like 80 |