PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G00980.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 293aa    MW: 32071.7 Da    PI: 4.933
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G00980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.42.8e-08951412059
                      S-EEEEEE-ST...T---EEEEEE-SS....STTEEEEEEES--SS- CS
             WRKY  20 fprsYYrCtsa...gCpvkkkversae....dpkvveitYegeHnhe 59 
                       +rsYYrCt +   gC++kk v+r++          ++ Y +eH+++
  LPERR11G00980.1  95 KTRSYYRCTNSteqGCQAKKTVQRNDGinggAAARYTVSYISEHTCK 141
                      68******9988889*********98421113345678899999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007747.6E-779142IPR003657WRKY domain
SuperFamilySSF1182906.54E-894141IPR003657WRKY domain
PfamPF031061.4E-994141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-995142IPR003657WRKY domain
PROSITE profilePS508119.20197119IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MELEAYWRMN RELEADELQH LLLFRPSLMT QQATSSGECL PPAGVTKTVS GEGRRLGRKR  60
SLRPVDNNNV KLRRRLQEDD DGAANAKPLR RPCTKTRSYY RCTNSTEQGC QAKKTVQRND  120
GINGGAAARY TVSYISEHTC KSINESMAPV ILETTIKPIA TFGSACSAES PATSSLTSDI  180
ITASSTTWSS SSVTSSGETS CSGEMHGDCE HLQVAANEEY CWDSTTTTPA MATNYSVNIN  240
DGVDVEEMDL RGPIRSPVHI MAEANWMDDL FLLSNELIGD VFSGGSISQL FNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G00980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XNF30.0A0A0D9XNF3_9ORYZ; Uncharacterized protein
STRINGLPERR11G00980.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-07WRKY family protein