PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G13500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 409aa    MW: 44967.1 Da    PI: 4.9241
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G13500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.7e-1151107256
              AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                       ++GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g+
  LPERR08G13500.1  51 AFRGVTRHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAARAYDLAALKYWGH 107
                      58******************77779888877777999999**************997 PP
2AP248.12.8e-15149200155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  LPERR08G13500.1 149 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 200
                      89****99**********99966...3.6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-1450116IPR016177DNA-binding domain
PROSITE profilePS5103218.26851114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-1251115IPR001471AP2/ERF domain
SMARTSM003807.2E-2051120IPR001471AP2/ERF domain
PRINTSPR003674.7E-55263IPR001471AP2/ERF domain
PfamPF008477.9E-952107IPR001471AP2/ERF domain
PRINTSPR003674.7E-596116IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-17149210IPR016177DNA-binding domain
CDDcd000183.92E-23149210No hitNo description
PfamPF008476.6E-10149199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-17150208IPR001471AP2/ERF domain
PROSITE profilePS5103217.728150208IPR001471AP2/ERF domain
SMARTSM003805.4E-26150214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAKRRTNESA AASSDDSSSG GGGSGVDQMT RRQKRPRKSS PRDCPSQRSS AFRGVTRHRW  60
TGRFEAHLWD KNTWNESQSK KGRQGAYDGE EAAARAYDLA ALKYWGHETV LNFPLSTYDE  120
ELKEMEGQSR EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GKWEARIGRV FGNKYLYLGT  180
YATQEEAAVA YDIAAIEHRG LNAVTNFDIN LYIKWHHTCR LSTTADANDS AVLDAADIED  240
LDQAIAAALN EVDDQPSTPT THQQTADEDD EFLAQLPPQL RPLMAHAASS SSTSSAIGLL  300
LQSPKFKEII EQAAASSGIS ISSSSSSSTD SPSQSPSPPL QQPTALKDDE QYNVDSSLSL  360
PARCSFPDDV QTYFGLDDDC GFGYPEVDTF LFGDLGEYAA PMFQFELDG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G13500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067690.0AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
GenBankHQ8588200.0HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651011.11e-178AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN41e-91AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9X8C70.0A0A0D9X8C7_9ORYZ; Uncharacterized protein
STRINGLPERR08G13500.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-89AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]