PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G02350.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C3H

Protein Properties

Length: 943aa MW: 104251 Da PI: 9.0243

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G02350.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.2e-06	312	331	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f + G C++G++C+++H+ LPERR08G02350.1 312 CHDFVK-GRCSRGANCRYNHD 331 ****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.427	221	248	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0039	222	247	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	226	246	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.084	306	333	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.17	306	332	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.671	365	392	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-7	366	390	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.1E-6	366	391	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-4	369	391	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MTGEARKERS KWDAKGPPDI VEISEDESLP LNTDDQHKSG DLLHPNRDFA HGKDSQTGES 60 VNLKSAVSMH HGSAGHEQDR ADGHNKDIKE RSSKASSERL HPLRGDEDHN KNDWHSRGFE 120 KATGNQGMSR YTDDRRRSDG WGTTISRGYS SRISSGPDAW KQRSRSPLSP RGGWNRPRRN 180 RSRSRSRSRS RSRSIGRGRG RSRSRSPYFN DRGSEWRLDR GRPALPCRDF VAGRCRRGSN 240 CRFPHEDGVR RQFDEHYPID SRERYGHQNR EFMDSREQDD YIRSRPSRGG HYDEGTWERS 300 EPRREYRSTM QCHDFVKGRC SRGANCRYNH DDSTSHSGWR DEVRDSAIGR GGPDASFGSR 360 VDHRRTNKNP CKFFANGHCR RGQNCPYLHE EASQSQTGLS APDDPLGYTG GTTTRGNYLN 420 WSEQNNAVQA SSHVLSRDDR ENPVPQGISR NDPRYENKNR HPKDPGSSQY QIFPQEDFGS 480 LEQKKSEIAA SQPPHFLPSI QTDAKIINID NVSETGGQSG PGAIGNLSMQ SGMHVANLVG 540 GQNLDQKAES QDAIAQISAA PSLPGATQLQ NTTSSVPFNG QLQQSDFSLH PNRQDQFVVP 600 HATTNNSAPV QSQPVAPYMG HSQHSYIMGA QALPDLSAHN GHVFSVAGQV PQNLPTIMHT 660 GQAQAANDTP NPGRDSGDQS FQNTHNFQPV APNELTQNQT LQGLSVLANS SSVDMAGAPL 720 SHNAVSSLTA SLAQYFGPVL TVDTTGQQSS QPDPNSSLMN NSSAAPQAVQ PNHWPWLQQA 780 GTIQPAHTVQ SEQPAPQTFQ APMASGSSNG PLPLPYSVAP IAPAAVLAGH ETTPAENKKE 840 PKDTDAEALE DGENKKGKDS KALKMFKLAL ADFVKDALKP TWKEGQMSRE IHKTIVKKVV 900 DKVTTTVENT PQTKDKIDIY MSYSREKLNK LVQAYVGKYA KKD

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MTGEARKERS KWDAKGPPDI VEISEDESLP LNTDDQHKSG DLLHPNRDFA HGKDSQTGES  60
VNLKSAVSMH HGSAGHEQDR ADGHNKDIKE RSSKASSERL HPLRGDEDHN KNDWHSRGFE  120
KATGNQGMSR YTDDRRRSDG WGTTISRGYS SRISSGPDAW KQRSRSPLSP RGGWNRPRRN  180
RSRSRSRSRS RSRSIGRGRG RSRSRSPYFN DRGSEWRLDR GRPALPCRDF VAGRCRRGSN  240
CRFPHEDGVR RQFDEHYPID SRERYGHQNR EFMDSREQDD YIRSRPSRGG HYDEGTWERS  300
EPRREYRSTM QCHDFVKGRC SRGANCRYNH DDSTSHSGWR DEVRDSAIGR GGPDASFGSR  360
VDHRRTNKNP CKFFANGHCR RGQNCPYLHE EASQSQTGLS APDDPLGYTG GTTTRGNYLN  420
WSEQNNAVQA SSHVLSRDDR ENPVPQGISR NDPRYENKNR HPKDPGSSQY QIFPQEDFGS  480
LEQKKSEIAA SQPPHFLPSI QTDAKIINID NVSETGGQSG PGAIGNLSMQ SGMHVANLVG  540
GQNLDQKAES QDAIAQISAA PSLPGATQLQ NTTSSVPFNG QLQQSDFSLH PNRQDQFVVP  600
HATTNNSAPV QSQPVAPYMG HSQHSYIMGA QALPDLSAHN GHVFSVAGQV PQNLPTIMHT  660
GQAQAANDTP NPGRDSGDQS FQNTHNFQPV APNELTQNQT LQGLSVLANS SSVDMAGAPL  720
SHNAVSSLTA SLAQYFGPVL TVDTTGQQSS QPDPNSSLMN NSSAAPQAVQ PNHWPWLQQA  780
GTIQPAHTVQ SEQPAPQTFQ APMASGSSNG PLPLPYSVAP IAPAAVLAGH ETTPAENKKE  840
PKDTDAEALE DGENKKGKDS KALKMFKLAL ADFVKDALKP TWKEGQMSRE IHKTIVKKVV  900
DKVTTTVENT PQTKDKIDIY MSYSREKLNK LVQAYVGKYA KKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	192	RSRSRSRSRSR
2	184	192	RSRSRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G02350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100455	0.0	AK100455.1 Oryza sativa Japonica Group cDNA clone:J023091E18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650360.1	0.0	zinc finger CCCH domain-containing protein 55
Refseq	XP_025883327.1	0.0	zinc finger CCCH domain-containing protein 55
Swissprot	Q6YYC0	0.0	C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBL	A0A0D9X459	0.0	A0A0D9X459_9ORYZ; Uncharacterized protein
STRING	LPERR08G02350.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7766	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-11	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]