PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 214aa    MW: 21718.5 Da    PI: 8.2133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029134156123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C ++F++   L  H r+H
  LPERR07G17860.1 134 HRCGICQRTFPSGQALGGHKRLH 156
                      79*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.2284106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.91E-884156No hitNo description
PROSITE profilePS501579.26584111IPR007087Zinc finger, C2H2
PfamPF139126.2E-1384108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PfamPF139121.3E-10133158IPR007087Zinc finger, C2H2
SMARTSM003550.17134156IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182134156IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MALDGKPPSP LPMDSWACAG RRSKRRAGGG GGGCSGSSGS SGSGESEEEY MATCLLMLAR  60
GVRDEAEVVG VAAAAAKPSN QHGYGCSVCG KVYPSYQALG GHKTSHRKPP APQAAAAAAG  120
DEASCGVSVE AKVHRCGICQ RTFPSGQALG GHKRLHYEGG DAVNKEKTKA AAAVAEAAIA  180
VLKDFDLNLP AATVGDEVES SPPEAKRARM LLLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G17860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647209.18e-72zinc finger protein 1
TrEMBLA0A0D9X1031e-151A0A0D9X103_9ORYZ; Uncharacterized protein
STRINGLPERR07G17860.11e-152(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-26C2H2 family protein